Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | CGZ53_RS00870 | Genome accession | NZ_CP022435 |
| Coordinates | 144462..144860 (+) | Length | 132 a.a. |
| NCBI ID | WP_012657691.1 | Uniprot ID | - |
| Organism | Streptococcus uberis strain NZ01 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 139462..149860
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CGZ53_RS00860 (CGZ53_00860) | ytpR | 139669..140295 (+) | 627 | WP_012657689.1 | YtpR family tRNA-binding protein | - |
| CGZ53_RS00865 (CGZ53_00865) | - | 140489..144298 (+) | 3810 | WP_100911840.1 | GH32 C-terminal domain-containing protein | - |
| CGZ53_RS00870 (CGZ53_00870) | ssbA | 144462..144860 (+) | 399 | WP_012657691.1 | single-stranded DNA-binding protein | Machinery gene |
| CGZ53_RS00875 (CGZ53_00875) | - | 145351..146310 (+) | 960 | WP_100911841.1 | ABC transporter substrate-binding protein | - |
| CGZ53_RS00880 (CGZ53_00880) | - | 146327..147289 (+) | 963 | WP_046388460.1 | ABC transporter substrate-binding protein | - |
| CGZ53_RS00885 (CGZ53_00885) | - | 147326..148210 (+) | 885 | WP_046387802.1 | ABC transporter permease | - |
| CGZ53_RS00890 (CGZ53_00890) | - | 148219..149022 (+) | 804 | WP_046387803.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 132 a.a. Molecular weight: 15145.29 Da Isoelectric Point: 5.9467
>NTDB_id=239367 CGZ53_RS00870 WP_012657691.1 144462..144860(+) (ssbA) [Streptococcus uberis strain NZ01]
MYNKVILIGRLVANPELITTPKNKQVCRVSVAVNRRYKNAEGERQVDFINLVLWGKLAESLASYGSKGSLISIDGELRTR
KYEKDGKTSYMTEVLGHFYQLLESRAQRAMRENNMTDDLTDLVLDEEEELPF
MYNKVILIGRLVANPELITTPKNKQVCRVSVAVNRRYKNAEGERQVDFINLVLWGKLAESLASYGSKGSLISIDGELRTR
KYEKDGKTSYMTEVLGHFYQLLESRAQRAMRENNMTDDLTDLVLDEEEELPF
Nucleotide
Download Length: 399 bp
>NTDB_id=239367 CGZ53_RS00870 WP_012657691.1 144462..144860(+) (ssbA) [Streptococcus uberis strain NZ01]
ATGTATAATAAAGTAATTCTTATAGGACGTTTAGTGGCTAATCCGGAATTGATTACCACTCCTAAAAACAAACAGGTTTG
TCGGGTTTCGGTAGCTGTCAATCGCCGTTATAAAAATGCGGAAGGGGAAAGACAAGTTGATTTCATTAATTTAGTGCTTT
GGGGGAAATTGGCAGAAAGTTTAGCCTCTTATGGAAGCAAAGGCAGTTTAATTTCCATTGATGGCGAATTGCGAACCCGT
AAATATGAAAAAGATGGCAAGACCAGCTATATGACGGAGGTTTTAGGTCATTTTTATCAGCTCTTGGAAAGCCGTGCCCA
GAGGGCTATGCGTGAAAATAACATGACCGATGATTTAACCGATTTGGTCCTTGATGAAGAGGAGGAGCTTCCTTTTTAA
ATGTATAATAAAGTAATTCTTATAGGACGTTTAGTGGCTAATCCGGAATTGATTACCACTCCTAAAAACAAACAGGTTTG
TCGGGTTTCGGTAGCTGTCAATCGCCGTTATAAAAATGCGGAAGGGGAAAGACAAGTTGATTTCATTAATTTAGTGCTTT
GGGGGAAATTGGCAGAAAGTTTAGCCTCTTATGGAAGCAAAGGCAGTTTAATTTCCATTGATGGCGAATTGCGAACCCGT
AAATATGAAAAAGATGGCAAGACCAGCTATATGACGGAGGTTTTAGGTCATTTTTATCAGCTCTTGGAAAGCCGTGCCCA
GAGGGCTATGCGTGAAAATAACATGACCGATGATTTAACCGATTTGGTCCTTGATGAAGAGGAGGAGCTTCCTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Streptococcus mutans UA159 |
75.758 |
100 |
0.758 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
69.697 |
100 |
0.697 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
69.697 |
100 |
0.697 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
68.939 |
100 |
0.689 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
68.182 |
100 |
0.682 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
68.182 |
100 |
0.682 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
68.182 |
100 |
0.682 |
| ssbB/cilA | Streptococcus mitis SK321 |
68.182 |
100 |
0.682 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
57.143 |
84.848 |
0.485 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
45.133 |
85.606 |
0.386 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
45.283 |
80.303 |
0.364 |