Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   Asalp_RS20645 Genome accession   NZ_CP022426
Coordinates   4412740..4413981 (+) Length   413 a.a.
NCBI ID   WP_021140339.1    Uniprot ID   -
Organism   Aeromonas salmonicida subsp. pectinolytica 34mel     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4407740..4418981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Asalp_RS20625 (Asalp_40370) nadC 4408126..4408983 (+) 858 WP_021139036.1 carboxylating nicotinate-nucleotide diphosphorylase -
  Asalp_RS20630 (Asalp_40380) - 4409319..4409741 (+) 423 WP_021139037.1 pilin -
  Asalp_RS20635 (Asalp_40400) - 4409861..4410892 (+) 1032 WP_001809438.1 IS630-like element ISAhy2 family transposase -
  Asalp_RS20640 (Asalp_40390) pilB 4410929..4412611 (+) 1683 WP_034524152.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  Asalp_RS20645 (Asalp_40410) pilC 4412740..4413981 (+) 1242 WP_021140339.1 type II secretion system F family protein Machinery gene
  Asalp_RS20650 (Asalp_40420) pilD 4414045..4414920 (+) 876 WP_021140338.1 A24 family peptidase Machinery gene
  Asalp_RS20655 (Asalp_40430) coaE 4414940..4415554 (+) 615 WP_021140337.1 dephospho-CoA kinase -
  Asalp_RS20660 (Asalp_40440) zapD 4415592..4416314 (+) 723 WP_021140336.1 cell division protein ZapD -
  Asalp_RS20665 (Asalp_40450) yacG 4416324..4416518 (+) 195 WP_005314167.1 DNA gyrase inhibitor YacG -
  Asalp_RS20670 (Asalp_40460) mutT 4416596..4417003 (-) 408 WP_005314168.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45325.42 Da        Isoelectric Point: 9.7813

>NTDB_id=239315 Asalp_RS20645 WP_021140339.1 4412740..4413981(+) (pilC) [Aeromonas salmonicida subsp. pectinolytica 34mel]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTRVSKKSQGLFSKGGARIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSDALRRHPRHFDALYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPAMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQDWWYVIFGGIG
LGIFLYVRAWRASQKVKDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=239315 Asalp_RS20645 WP_021140339.1 4412740..4413981(+) (pilC) [Aeromonas salmonicida subsp. pectinolytica 34mel]
ATGGCAACGCTAACGCAAAAACAGAATGCCCCCAAGAAAGTCTTTGCCTTCCGCTGGAGCGGGGTAAATCGCAAGGGTCA
GAAGGTATCCGGCGAGCTGCAGGCCGACAGCATCAATACGGTCAAGGCCGAACTGCGCAAACAGGGGGTCAATGTCACCA
GAGTGAGCAAAAAGAGCCAGGGGCTTTTTTCCAAGGGTGGCGCCAGGATCAAACCGATGGATATCGCCATCGTTTCCCGT
CAGATCACCACAATGCTCTCCGCCGGGGTACCTCTGGTACAGAGCCTGCAGATCATAGCCCGCAGCCATGAAAAAGCCGC
GATGCGCGAGCTGATGGGCCAGATCGCTGCCGATGTGGAGACAGGCACCCCGATGTCAGATGCCCTGCGCCGCCACCCTC
GCCACTTTGATGCGCTCTATTGCGATCTGGTGGAAGCGGGCGAGCAATCCGGCGCGCTGGAAACCATCTACGATCGCATC
GCCACCTATAGAGAAAAGTCGGAAGCGCTCAAGTCCAAGATCAAGAAGGCGATGTTCTATCCGGCCATGGTCATCCTGGT
CGCCATCGTCGTCACCTCCATACTGCTGCTGTTCGTCATCCCGCAGTTCGAGGACATCTTCAAGAGCTTTGGTGCCGAGC
TGCCCATCTTCACCCAGTTTGTCATCGGCATCTCCCGCTTCATGCAGGATTGGTGGTATGTGATTTTTGGCGGGATAGGG
CTTGGCATTTTCCTTTATGTACGAGCCTGGCGCGCGTCCCAGAAAGTCAAAGACAACACAGACAAGTTCATCCTCACCAT
TCCCGTGGTGGGCATGATACTGCACAAGGCGGCCATGGCCCGCTTCGCTCGCACCCTCTCCACCACCTTCTCGGCGGGCA
TACCCCTGGTGGATGCACTGATCTCGGCCGCCGGCGCCTCAGGCAACTATGTCTATCGCACCGCCGTCATGGCCATTCGC
AACGAGGTGGTAGCCGGCATGCAGATCAACGTGGCCATGCGCACCGTGGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCAGGCGCCATCGATGATATGCTCTCCAAGGTCGCGACCATCTTCGAGCAAGAGGTCGATGACT
TGGTCGACGGCCTCACCAGCCTGCTGGAGCCCCTCATCATGGTGGTGCTGGGGGTACTGGTCGGCGGCATGGTCGTCGCC
ATGTACCTGCCCATATTCAAGCTGGGTGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.313

95.884

0.54
  pilC Acinetobacter baumannii D1279779

54.5

96.852

0.528
  pilC Acinetobacter baylyi ADP1

52.645

96.126

0.506
  pilC Legionella pneumophila strain ERS1305867

50.617

98.063

0.496
  pilC Vibrio cholerae strain A1552

47.382

97.094

0.46
  pilC Vibrio campbellii strain DS40M4

46.287

97.821

0.453
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

37.75

96.852

0.366

Multiple sequence alignment