Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CEQ48_RS18890 Genome accession   NZ_CP022353
Coordinates   2850995..2852110 (+) Length   371 a.a.
NCBI ID   WP_089072255.1    Uniprot ID   -
Organism   Vibrio tarriae strain 2521-89     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2845995..2857110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ48_RS18870 (CEQ48_18870) rsmB 2846918..2848198 (-) 1281 WP_089072251.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  CEQ48_RS18875 (CEQ48_18875) fmt 2848254..2849201 (-) 948 WP_089072252.1 methionyl-tRNA formyltransferase -
  CEQ48_RS18880 (CEQ48_18880) def 2849219..2849728 (-) 510 WP_089072253.1 peptide deformylase -
  CEQ48_RS18885 (CEQ48_18885) - 2849868..2850995 (+) 1128 WP_198301208.1 LysM peptidoglycan-binding domain-containing protein -
  CEQ48_RS18890 (CEQ48_18890) dprA 2850995..2852110 (+) 1116 WP_089072255.1 DNA-processing protein DprA Machinery gene
  CEQ48_RS18895 (CEQ48_18895) - 2852113..2852589 (+) 477 WP_089072256.1 DUF494 family protein -
  CEQ48_RS18900 (CEQ48_18900) - 2852605..2853171 (+) 567 WP_181714887.1 type I DNA topoisomerase -
  CEQ48_RS18905 (CEQ48_18905) - 2853244..2854377 (-) 1134 WP_089072258.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  CEQ48_RS18910 (CEQ48_18910) purE 2854381..2854866 (-) 486 WP_000215765.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  CEQ48_RS18915 (CEQ48_18915) - 2855033..2855590 (+) 558 WP_198301209.1 L-threonylcarbamoyladenylate synthase -
  CEQ48_RS18920 (CEQ48_18920) hemF 2855609..2856526 (+) 918 WP_000443983.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 39976.91 Da        Isoelectric Point: 7.4813

>NTDB_id=238654 CEQ48_RS18890 WP_089072255.1 2850995..2852110(+) (dprA) [Vibrio tarriae strain 2521-89]
MKEQDLATWLALCFTPKLGSKTISHLLATRLPAQLQSFTPKQWLANGLKPEQLVFLTTQAAKQAEQCLQWRSAANNRYIV
TPHCPLYPRLLKEISSSPPVLFIEGIWESVHDPAVAIVGSRNASVDGRQIARQFASELAQSGLVVASGLALGIDGYAHDG
ALQAQGQTVAVLGSGLAKVYPKQHQGLAERIIAQGALVSEFAPHTPPKADHFPRRNRIISGLSLGVVVVEAAEKSGSLIT
ARYAAEQGREVFVVPGSIFNAASQGSNQLIRQGACLVQSVQQIHQELKNALTWSLSEQAPYQATLFSAVQGDEELPFPEL
LANVGIEATPIDILASRTQIPVQDIMMQLLELELLGHVVAVPGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=238654 CEQ48_RS18890 WP_089072255.1 2850995..2852110(+) (dprA) [Vibrio tarriae strain 2521-89]
ATGAAAGAGCAGGATTTGGCGACATGGTTGGCGCTCTGTTTTACCCCTAAGCTGGGCAGCAAAACCATTTCTCACCTGCT
TGCGACCCGTTTGCCAGCCCAGTTGCAAAGTTTTACGCCTAAGCAATGGTTGGCCAACGGGCTTAAGCCCGAACAACTGG
TGTTTTTAACCACTCAAGCGGCTAAGCAAGCCGAGCAGTGTTTGCAATGGCGCTCGGCAGCCAATAACCGCTATATCGTC
ACTCCTCATTGCCCGCTTTATCCCCGTTTATTGAAAGAGATTAGCTCATCGCCTCCCGTCCTGTTTATTGAAGGAATATG
GGAATCGGTGCATGACCCCGCGGTAGCTATCGTGGGTAGCCGCAATGCCAGTGTTGATGGGCGGCAGATCGCTCGCCAAT
TTGCCTCTGAGCTCGCGCAGTCGGGTTTAGTGGTCGCCAGTGGTTTAGCGCTTGGTATTGATGGCTATGCGCACGATGGC
GCTTTGCAAGCACAAGGGCAAACCGTGGCAGTATTAGGCTCAGGACTGGCAAAGGTTTACCCAAAGCAGCATCAAGGGTT
AGCGGAGCGGATCATCGCCCAAGGGGCCTTGGTTTCTGAGTTTGCTCCTCACACGCCTCCTAAAGCTGATCATTTCCCGC
GCCGTAACCGGATTATCAGCGGCTTATCGCTGGGCGTTGTAGTGGTAGAAGCGGCGGAGAAAAGCGGTTCACTCATCACC
GCACGCTACGCGGCTGAGCAAGGGCGTGAGGTCTTTGTGGTTCCCGGATCAATTTTTAATGCCGCCAGCCAAGGTAGCAA
TCAATTGATTCGCCAAGGCGCTTGTTTGGTGCAAAGTGTGCAACAAATTCATCAAGAGCTCAAAAATGCGCTGACTTGGT
CACTCTCTGAACAAGCTCCTTATCAAGCAACACTTTTTTCTGCTGTACAGGGCGATGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGAATAGAAGCTACACCTATTGATATTCTCGCAAGCCGGACCCAGATACCGGTGCAAGATATCATGAT
GCAGCTCTTGGAGCTTGAGCTCCTTGGGCATGTGGTTGCAGTACCTGGTGGCTATATTAGAAAGGGGAGAGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-278)

DprA winged helix domain (DprA_WH)

(319-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

97.305

100

0.973
  dprA Vibrio campbellii strain DS40M4

57.766

98.922

0.571
  dprA Glaesserella parasuis strain SC1401

43.351

100

0.439
  dprA Legionella pneumophila strain ERS1305867

43.048

100

0.434
  dprA Neisseria meningitidis strain C311

37.845

100

0.407
  dprA Neisseria meningitidis MC58

37.845

100

0.407
  dprA Neisseria gonorrhoeae strain FA1090

36.658

100

0.396
  dprA Neisseria gonorrhoeae MS11

35.84

100

0.385
  dprA Acinetobacter baumannii D1279779

43.202

89.218

0.385
  dprA Acinetobacter baumannii strain A118

42.9

89.218

0.383
  dprA Acinetobacter baylyi ADP1

42.813

88.14

0.377

Multiple sequence alignment