Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   CFN77_RS11660 Genome accession   NZ_CP022319
Coordinates   2280591..2280884 (-) Length   97 a.a.
NCBI ID   WP_008342186.1    Uniprot ID   A0A5K1NAM4
Organism   Bacillus altitudinis strain SGAir0031     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2275591..2285884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFN77_RS11610 (CFN77_11730) sinR 2275755..2276090 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  CFN77_RS11615 (CFN77_11735) tasA 2276158..2276958 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  CFN77_RS11620 (CFN77_11740) sipW 2277017..2277589 (-) 573 WP_017357979.1 signal peptidase I SipW -
  CFN77_RS11625 (CFN77_11745) tapA 2277639..2278166 (-) 528 WP_056705241.1 amyloid fiber anchoring/assembly protein TapA -
  CFN77_RS11630 (CFN77_11750) - 2278419..2278745 (+) 327 WP_058336653.1 DUF3889 domain-containing protein -
  CFN77_RS11635 (CFN77_11755) - 2278780..2278974 (-) 195 WP_008342191.1 YqzE family protein -
  CFN77_RS11640 (CFN77_11760) - 2279035..2279418 (-) 384 WP_024718845.1 competence type IV pilus minor pilin ComGG -
  CFN77_RS11645 (CFN77_11765) comGF 2279415..2279912 (-) 498 WP_096881619.1 competence type IV pilus minor pilin ComGF -
  CFN77_RS11650 (CFN77_11770) comGE 2279854..2280168 (-) 315 WP_096881620.1 competence type IV pilus minor pilin ComGE -
  CFN77_RS11655 (CFN77_11775) comGD 2280152..2280598 (-) 447 WP_096881621.1 competence type IV pilus minor pilin ComGD -
  CFN77_RS11660 (CFN77_11780) comGC 2280591..2280884 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  CFN77_RS11665 (CFN77_11785) comGB 2280901..2281941 (-) 1041 WP_096881622.1 competence type IV pilus assembly protein ComGB -
  CFN77_RS11670 (CFN77_11790) comGA 2281922..2282992 (-) 1071 WP_096881623.1 competence type IV pilus ATPase ComGA Machinery gene
  CFN77_RS11675 (CFN77_11795) - 2283451..2284323 (-) 873 WP_096881624.1 STAS domain-containing protein -
  CFN77_RS11685 (CFN77_11805) - 2284548..2284928 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  CFN77_RS11690 (CFN77_11810) - 2285141..2285383 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10728.62 Da        Isoelectric Point: 6.7081

>NTDB_id=238318 CFN77_RS11660 WP_008342186.1 2280591..2280884(-) (comGC) [Bacillus altitudinis strain SGAir0031]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=238318 CFN77_RS11660 WP_008342186.1 2280591..2280884(-) (comGC) [Bacillus altitudinis strain SGAir0031]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTCATGCTTGTGATCTCCATTCTTTTATTGATCACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGACGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAAGGATTAACT
TGTCCGAATGGAAAGGCAATTTTCATTCAAAACGGCGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NAM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392

Multiple sequence alignment