Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CFH90_RS15890 Genome accession   NZ_CP022298
Coordinates   3224430..3225656 (+) Length   408 a.a.
NCBI ID   WP_004692713.1    Uniprot ID   A0A1T1JPM5
Organism   Acinetobacter johnsonii strain IC001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3219430..3230656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFH90_RS15845 (CFH90_15785) rimP 3219797..3220321 (-) 525 WP_004692708.1 ribosome maturation factor RimP -
  CFH90_RS15875 (CFH90_15815) secG 3221273..3221602 (-) 330 WP_004692710.1 preprotein translocase subunit SecG -
  CFH90_RS15880 (CFH90_15820) tpiA 3221616..3222407 (-) 792 WP_126038501.1 triose-phosphate isomerase -
  CFH90_RS15885 (CFH90_15825) pilB 3222687..3224399 (+) 1713 WP_126038504.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CFH90_RS15890 (CFH90_15830) pilC 3224430..3225656 (+) 1227 WP_004692713.1 type II secretion system F family protein Machinery gene
  CFH90_RS15895 (CFH90_15835) pilD 3225656..3226516 (+) 861 WP_126038508.1 prepilin peptidase Machinery gene
  CFH90_RS15900 (CFH90_15840) coaE 3226523..3227122 (+) 600 WP_126038510.1 dephospho-CoA kinase -
  CFH90_RS15905 (CFH90_15845) - 3227136..3228053 (-) 918 WP_164836593.1 DMT family transporter -
  CFH90_RS15910 (CFH90_15850) rlmB 3228086..3228835 (-) 750 WP_004692717.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  CFH90_RS15915 (CFH90_15855) - 3228979..3229302 (-) 324 WP_004692718.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44818.28 Da        Isoelectric Point: 9.8660

>NTDB_id=238210 CFH90_RS15890 WP_004692713.1 3224430..3225656(+) (pilC) [Acinetobacter johnsonii strain IC001]
MAVKKAQMMPTFNYEGIDRKGAKIKGELPARNLALAKVTLRKQGITIKSIREKKKNILEGIMKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAVYK
EKSELLKQKIKKAMKYPATVVVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFILIIVVGVVIT
ALLETKKRSKKFRDMLDKAALKAPIFGDLVYKAIIARYSRTLSTTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRATNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTAMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=238210 CFH90_RS15890 WP_004692713.1 3224430..3225656(+) (pilC) [Acinetobacter johnsonii strain IC001]
ATGGCTGTCAAAAAAGCACAGATGATGCCAACCTTCAATTATGAAGGGATTGATCGTAAAGGGGCAAAAATTAAAGGGGA
ATTGCCTGCACGTAATCTCGCCCTCGCCAAAGTTACTTTGCGCAAACAAGGGATTACCATCAAGAGTATTCGAGAAAAGA
AAAAGAATATTCTTGAAGGGATAATGAAGAAAAAAGTGACGACACTGGACATCACAATTTTCACTCGACAGCTCGCAACC
ATGATGAAAGCGGGTGTACCGCTGGTTCAAGGTTTTGAAATTGTGGCTGAAGGCTTAGAAAACCCATCTATGCGTGAAGT
TGTCCTGGGCATTAAAGGCGAAGTTGAAGGCGGTAACACCTTTGCGGGAGCACTCAAAAAATATCCGCAATATTTCGACA
ACTTATTCTGTTCATTGGTTGAATCAGGCGAACAATCGGGTGCACTTGAGACCATGCTGGACCGCGTAGCGGTCTATAAA
GAAAAAAGTGAATTACTAAAACAAAAAATTAAAAAGGCCATGAAGTACCCAGCAACCGTGGTTGTGGTTGCAGTGATCGT
AACCATTATTTTGATGGTCAAAGTTGTGCCTGTTTTCCAAGATTTATTCAGCTCTTTTGGTGCAGACTTACCTGCATTCA
CTAAAATGGTGGTAAATATGTCTGAATGGATGCAGAAATACTGGTTCATTTTGATTATTGTCGTTGGTGTGGTGATTACC
GCTTTACTCGAAACCAAAAAGCGGAGTAAAAAGTTTCGTGACATGCTGGATAAAGCCGCGCTGAAAGCCCCGATTTTTGG
TGATTTAGTCTATAAAGCGATTATCGCGCGCTATAGCCGTACCCTATCCACAACCTTTGCTGCGGGTGTACCCTTAATTG
ATGCCCTCGAGTCTACAGCAGGTGCAACCAATAACGTGGTCTATGAAGAAGCAGTGATGAAAATCCGTGAAGATGTCGCA
ACAGGGCAACAACTTCAATTCGCGATGCGTGCCACCAATAAATTTCCATCGATGGCAGTACAAATGGTAGCGATTGGTGA
AGAATCTGGTGCGCTCGATGCCATGCTGGATAAAGTTGCCACTCACTATGAAAACGAAGTCGATAATGCGGTGGATGGCT
TAACGGCAATGATGGAACCTCTGATCATGGCAGTCTTGGGTGTACTTGTGGGTGGCCTAGTAATTGCCATGTATCTACCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T1JPM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.725

100

0.887
  pilC Acinetobacter baylyi ADP1

81.863

100

0.819
  pilC Pseudomonas stutzeri DSM 10701

61.728

99.265

0.613
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria gonorrhoeae MS11

46.482

97.549

0.453
  pilG Neisseria meningitidis 44/76-A

46.482

97.549

0.453
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

41.667

100

0.417
  pilC Thermus thermophilus HB27

36.908

98.284

0.363

Multiple sequence alignment