Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   CFH90_RS01820 Genome accession   NZ_CP022298
Coordinates   371781..373814 (+) Length   677 a.a.
NCBI ID   WP_410169713.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain IC001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 366781..378814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFH90_RS01800 (CFH90_01785) pilM 368756..369814 (+) 1059 WP_058870420.1 pilus assembly protein PilM Machinery gene
  CFH90_RS01805 (CFH90_01790) pilN 369814..370470 (+) 657 WP_004691498.1 PilN domain-containing protein Machinery gene
  CFH90_RS01810 (CFH90_01795) pilO 370467..371189 (+) 723 WP_126035047.1 type 4a pilus biogenesis protein PilO Machinery gene
  CFH90_RS01815 (CFH90_01800) pilP 371189..371716 (+) 528 WP_126035049.1 pilus assembly protein PilP Machinery gene
  CFH90_RS01820 (CFH90_01805) pilQ 371781..373814 (+) 2034 WP_410169713.1 type IV pilus secretin PilQ Machinery gene
  CFH90_RS01825 (CFH90_01810) aroK 373852..374385 (+) 534 WP_125280899.1 shikimate kinase AroK -
  CFH90_RS01830 (CFH90_01815) aroB 374416..375501 (+) 1086 WP_126035053.1 3-dehydroquinate synthase -
  CFH90_RS01835 (CFH90_01820) - 375509..376348 (+) 840 WP_126035055.1 hypothetical protein -

Sequence

Protein


Download         Length: 677 a.a.        Molecular weight: 73486.63 Da        Isoelectric Point: 5.1400

>NTDB_id=238184 CFH90_RS01820 WP_410169713.1 371781..373814(+) (pilQ) [Acinetobacter johnsonii strain IC001]
MNHMFRQFSMGAIAMVVMQAASAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPQAYQLEQPSRLVLDFDKAQQSLKQGSI
AIATAEASTVDVTSDAQRSRLTVNLADAGAFTTRVEGNTFILKINSANPAVATPVAAARSEQGISNIGFQRGSDGEGQVV
IDLKGSNTPVDVKQQGSKIVVRVLGNKIPVHLSRRLNVNDFATPVSTIDAQNDGSNGLITIQSNGSFEYMAYQAEDKLTI
SLKRPEDKNPMKPKAPSAYTGKKISLDFQDIEVRRVLQLLADFTGINMVASDTVQGNITLRLKDVPWDQALDIIMKTKNL
DKRRNGNVIWIAPVAELIKSEEDEAKAIAQSIKLAPIQTDYIQLSYAKAADVLKLLEDSRDAKGSVSNRTAGSDSLALES
LLSSRGSVVSDSRTNTLIVNDTSQNIDKIRKMIDLLDVAVKQVMVEARIVTASTDFSRELGIKWSAQKLGNSPVWGGDFQ
PSFDLGVDLATNTAGTFNFGLLKISDYMLNLELTALQADGHGEVLSAPKVLTGDKQKAYILRGTEIPYQTYSATEGLKTE
FRAANLKLEVTPSITPDGKVQMALLVEKDSIGAITNDGIAIDTSELQTNVLVDDGETVVLGGIFDDVKRNDYEKVPFLAD
LPVVGNLFKNNVKTTMQTELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2034 bp        

>NTDB_id=238184 CFH90_RS01820 WP_410169713.1 371781..373814(+) (pilQ) [Acinetobacter johnsonii strain IC001]
ATGAACCATATGTTCCGTCAGTTTTCAATGGGCGCAATTGCAATGGTGGTGATGCAGGCTGCAAGTGCGCAAGTCAGTAT
TACGAATATTGTGCCGATGCAGATTCCGGGACAGGGAACAGAAATTCGTGTCATGTTCAACGGTTTGCCGCCACAGCCGC
AAGCCTATCAGTTGGAACAGCCATCCCGTTTGGTTTTAGATTTTGATAAAGCACAGCAGAGCTTAAAACAAGGTAGTATT
GCGATTGCAACGGCTGAAGCAAGTACAGTAGATGTAACTTCAGATGCGCAGCGTTCACGTTTAACTGTAAATTTGGCGGA
TGCCGGTGCATTTACTACACGTGTTGAAGGTAATACCTTTATTCTGAAAATTAACTCAGCGAACCCGGCGGTAGCAACAC
CTGTTGCTGCGGCACGTTCAGAGCAAGGTATTTCGAATATTGGTTTCCAGCGTGGTTCAGACGGTGAAGGCCAAGTTGTG
ATTGATTTAAAAGGTAGCAATACCCCTGTTGATGTGAAACAGCAAGGCAGTAAAATTGTGGTTCGTGTTTTGGGAAATAA
AATTCCTGTCCATTTATCACGTCGTCTAAATGTGAATGATTTCGCAACACCAGTCTCGACCATTGATGCACAAAACGATG
GTAGTAACGGCCTGATTACTATTCAATCGAACGGCAGTTTTGAATATATGGCTTATCAGGCAGAAGATAAGCTCACCATT
AGTTTAAAGCGTCCTGAAGATAAAAATCCAATGAAGCCTAAAGCACCAAGTGCTTATACGGGCAAAAAGATTTCTTTAGA
TTTTCAAGATATTGAAGTGCGACGTGTATTACAGCTCTTAGCTGATTTTACAGGCATTAACATGGTGGCTTCTGACACTG
TACAAGGGAATATTACCTTGCGCCTTAAAGATGTGCCATGGGATCAAGCACTTGATATTATTATGAAAACCAAGAATTTG
GATAAGCGACGCAATGGCAATGTGATTTGGATTGCACCTGTAGCTGAACTGATCAAGTCTGAGGAAGATGAGGCGAAAGC
CATTGCACAAAGTATAAAGCTTGCACCAATCCAAACCGATTATATTCAATTGAGTTATGCAAAAGCTGCTGATGTACTGA
AGTTGTTAGAGGACTCTCGCGATGCTAAGGGGAGTGTGTCTAATCGTACAGCGGGTTCAGACTCCTTAGCTTTGGAAAGT
TTATTGAGTTCGCGGGGGAGTGTTGTTTCAGACTCACGTACTAATACGCTAATTGTGAATGATACTTCGCAAAATATTGA
TAAAATTAGAAAAATGATAGACTTGCTTGATGTGGCTGTAAAGCAGGTGATGGTTGAAGCGCGTATTGTGACTGCTTCTA
CGGACTTTTCTCGTGAGTTGGGGATTAAGTGGAGTGCACAAAAGCTGGGCAATAGTCCAGTATGGGGCGGGGATTTCCAA
CCGAGTTTTGATTTGGGGGTGGATTTAGCAACAAACACGGCTGGTACATTTAACTTCGGGTTATTGAAAATCTCAGATTA
TATGTTAAACCTTGAGTTAACGGCGCTACAGGCAGATGGTCATGGTGAGGTGTTATCAGCACCGAAAGTACTTACTGGCG
ATAAACAAAAAGCTTATATTTTACGAGGAACAGAGATTCCTTATCAAACATATAGCGCGACAGAGGGTTTGAAAACAGAA
TTCCGTGCGGCTAACTTAAAGCTAGAGGTGACTCCAAGTATCACGCCTGATGGTAAAGTTCAGATGGCACTCTTGGTTGA
GAAAGACTCCATTGGTGCGATTACTAATGATGGTATTGCGATTGACACCAGTGAATTACAAACCAATGTCTTGGTAGATG
ATGGTGAGACGGTTGTACTGGGTGGTATTTTTGATGATGTGAAGCGTAATGACTATGAAAAAGTGCCATTTCTAGCTGAT
TTACCAGTGGTGGGGAATTTATTTAAGAACAATGTCAAAACTACCATGCAAACTGAGTTGTTGATTTTTGTGACACCACG
AATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(40-120)

Secretin and TonB N terminus short domain (STN)

(290-333)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-442)

Bacterial type II and III secretion system protein (Secretin)

(515-669)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

64.404

100

0.687
  pilQ Acinetobacter baumannii strain A118

64.266

100

0.685
  comQ Acinetobacter baylyi ADP1

62.447

100

0.656
  pilQ Pseudomonas aeruginosa PAK

38.728

100

0.396
  pilQ Legionella pneumophila strain Lp02

37.446

100

0.381
  pilQ Legionella pneumophila strain ERS1305867

37.722

99.852

0.377
  pilQ Neisseria gonorrhoeae strain FA1090

35.18

100

0.375

Multiple sequence alignment