Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CFI10_RS13895 Genome accession   NZ_CP022297
Coordinates   2897849..2899093 (+) Length   414 a.a.
NCBI ID   WP_206835427.1    Uniprot ID   -
Organism   Marinobacterium iners strain IC961     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2892849..2904093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFI10_RS13860 (CFI10_13790) - 2892920..2893405 (-) 486 WP_206842161.1 GspH/FimT family pseudopilin -
  CFI10_RS13865 (CFI10_13795) - 2893691..2893945 (-) 255 WP_206835426.1 hypothetical protein -
  CFI10_RS13870 (CFI10_13800) - 2894023..2894394 (+) 372 Protein_2724 transposase -
  CFI10_RS13875 (CFI10_13805) - 2894396..2894877 (+) 482 Protein_2725 IS3 family transposase -
  CFI10_RS19405 (CFI10_13810) - 2895015..2895389 (-) 375 WP_341868535.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  CFI10_RS13885 - 2895746..2895865 (-) 120 Protein_2727 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  CFI10_RS13890 (CFI10_13820) pilB 2896139..2897836 (+) 1698 WP_206842166.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CFI10_RS13895 (CFI10_13825) pilC 2897849..2899093 (+) 1245 WP_206835427.1 type II secretion system F family protein Machinery gene
  CFI10_RS13900 (CFI10_13830) pilD 2899097..2899954 (+) 858 WP_206835430.1 A24 family peptidase Machinery gene
  CFI10_RS13905 (CFI10_13835) coaE 2899954..2900565 (+) 612 WP_206835434.1 dephospho-CoA kinase -
  CFI10_RS13910 (CFI10_13840) - 2900566..2900778 (+) 213 WP_091824692.1 DNA gyrase inhibitor YacG -
  CFI10_RS13915 (CFI10_13845) - 2900797..2902083 (-) 1287 WP_242529995.1 sugar transferase -
  CFI10_RS13920 (CFI10_13850) - 2902162..2902632 (-) 471 WP_206835435.1 nuclear transport factor 2 family protein -
  CFI10_RS13925 (CFI10_13855) - 2902629..2903411 (-) 783 WP_206835437.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45141.00 Da        Isoelectric Point: 10.0872

>NTDB_id=238166 CFI10_RS13895 WP_206835427.1 2897849..2899093(+) (pilC) [Marinobacterium iners strain IC961]
MAKALSRKQQQEEVKNTYVWQGRDKSGNISKGKIDAVNLAKAKSLLRHQGVNPHKIHKEGMGLFGSKSKPIKPVDIAYLI
RQLATMMRAGVPLLQALDLVSNGADKFKLKKLIQTVRSDVNSGTDFASALARHPDYFDDLVCSLVQAGEQSGALETMLDR
IATYKEKTESLKKKIKKAMTYPIAVIVVGVIVSAILLVKVVPQFDSIFRGFGADLPAFTQLVVNMSEWMQKWWFVVLLII
VASVFFFAKLHARSEKFSNLVDRSILRLPVFGGILHKAAVARFARTLATTFAAGVPLVEALNSAAGSTGNVVYSDAIKQI
RNGVSTGQSLTNATTMTGIFPVMVIQMLSIGEEAGSLDHMLDKIATFYEEDVDNAVDNLSSLLEPMIMVILGVLVGGLVI
AMYLPIFQLGQVVG

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=238166 CFI10_RS13895 WP_206835427.1 2897849..2899093(+) (pilC) [Marinobacterium iners strain IC961]
ATGGCTAAAGCACTAAGTCGAAAGCAACAACAGGAAGAAGTGAAAAACACCTACGTCTGGCAAGGGCGCGACAAGAGCGG
CAATATCAGCAAAGGTAAAATTGACGCGGTAAACCTTGCTAAAGCAAAATCTCTCCTTCGTCATCAGGGTGTTAACCCCC
ACAAAATTCACAAGGAGGGCATGGGTCTTTTTGGAAGCAAAAGCAAGCCCATTAAGCCGGTTGATATTGCTTACCTTATT
CGCCAACTGGCCACCATGATGAGAGCCGGTGTTCCCCTGTTACAGGCGCTCGATCTTGTTTCAAACGGTGCAGACAAGTT
CAAGCTTAAAAAGCTCATTCAGACTGTACGTTCCGATGTCAATTCAGGGACTGATTTTGCGTCTGCACTAGCGAGACACC
CCGACTATTTTGATGACCTTGTATGCTCCCTTGTGCAAGCTGGTGAACAGTCGGGCGCCTTGGAAACTATGCTCGACAGA
ATCGCAACCTACAAAGAGAAAACTGAGTCTCTCAAAAAGAAAATCAAAAAAGCCATGACTTACCCGATTGCCGTGATTGT
TGTGGGTGTCATTGTATCTGCGATTCTTCTTGTGAAGGTTGTGCCTCAGTTTGACTCAATATTCAGGGGATTCGGTGCCG
ACCTCCCTGCGTTCACACAACTCGTGGTGAACATGTCTGAGTGGATGCAGAAATGGTGGTTTGTGGTGCTGTTAATCATT
GTCGCATCTGTTTTCTTTTTTGCAAAACTACACGCCAGGTCGGAGAAGTTCTCGAATCTCGTTGATAGATCAATTCTAAG
GCTACCTGTATTTGGCGGAATTCTCCATAAAGCTGCAGTTGCCCGCTTTGCACGCACATTGGCCACAACTTTCGCTGCAG
GGGTACCGTTGGTAGAAGCCCTCAATTCTGCAGCTGGCTCTACGGGTAATGTGGTTTACAGTGATGCTATCAAGCAGATT
AGAAACGGGGTATCGACGGGGCAATCGCTAACCAATGCTACTACCATGACCGGTATATTTCCTGTAATGGTGATACAGAT
GTTATCAATCGGTGAAGAGGCGGGCTCTCTTGATCACATGCTGGATAAAATTGCCACCTTCTATGAAGAAGATGTGGATA
ACGCAGTGGACAACCTTTCCAGCCTGCTGGAACCGATGATTATGGTCATTCTTGGCGTATTGGTGGGTGGGCTTGTTATT
GCCATGTACCTGCCGATCTTCCAGCTGGGCCAGGTGGTTGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(80-202)

Type II secretion system (T2SS), protein F (T2SSF)

(283-405)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.673

97.585

0.563
  pilC Legionella pneumophila strain ERS1305867

55.639

96.377

0.536
  pilC Acinetobacter baylyi ADP1

53.827

97.826

0.527
  pilC Acinetobacter baumannii D1279779

54.523

96.135

0.524
  pilC Vibrio campbellii strain DS40M4

43.035

97.101

0.418
  pilG Neisseria gonorrhoeae MS11

42.317

95.894

0.406
  pilG Neisseria meningitidis 44/76-A

42.317

95.894

0.406
  pilC Vibrio cholerae strain A1552

40.931

98.551

0.403
  pilC Thermus thermophilus HB27

38.442

96.135

0.37

Multiple sequence alignment