Detailed information NTG0238167

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CFI10_RS13900
• Genome accession: NZ_CP022297
• Coordinates: 2899097..2899954 (+)
• Length: 285 a.a.
• NCBI ID: WP_206835430.1
• Uniprot ID: -
• Organism: Marinobacterium iners strain IC961
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2894097..2904954

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CFI10_RS13875 (CFI10_13805)	-	2894396..2894877 (+)	482	Protein_2725	IS3 family transposase	-
CFI10_RS19405 (CFI10_13810)	-	2895015..2895389 (-)	375	WP_341868535.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
CFI10_RS13885	-	2895746..2895865 (-)	120	Protein_2727	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
CFI10_RS13890 (CFI10_13820)	pilB	2896139..2897836 (+)	1698	WP_206842166.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CFI10_RS13895 (CFI10_13825)	pilC	2897849..2899093 (+)	1245	WP_206835427.1	type II secretion system F family protein	Machinery gene
CFI10_RS13900 (CFI10_13830)	pilD	2899097..2899954 (+)	858	WP_206835430.1	A24 family peptidase	Machinery gene
CFI10_RS13905 (CFI10_13835)	coaE	2899954..2900565 (+)	612	WP_206835434.1	dephospho-CoA kinase	-
CFI10_RS13910 (CFI10_13840)	-	2900566..2900778 (+)	213	WP_091824692.1	DNA gyrase inhibitor YacG	-
CFI10_RS13915 (CFI10_13845)	-	2900797..2902083 (-)	1287	WP_242529995.1	sugar transferase	-
CFI10_RS13920 (CFI10_13850)	-	2902162..2902632 (-)	471	WP_206835435.1	nuclear transport factor 2 family protein	-
CFI10_RS13925 (CFI10_13855)	-	2902629..2903411 (-)	783	WP_206835437.1	SDR family NAD(P)-dependent oxidoreductase	-
CFI10_RS13930 (CFI10_13860)	-	2903408..2904124 (-)	717	WP_206835439.1	DUF6134 family protein	-

Sequence

Protein

• Length: 285 a.a.
• Molecular weight: 31256.24 Da
• Isoelectric Point: 6.4718

>NTDB_id=238167 CFI10_RS13900 WP_206835430.1 2899097..2899954(+) (pilD) [Marinobacterium iners strain IC961]
MIELLMTEPLVAALFALVTSLLVGSFLNVVILRLPVMMQREWDAMLQAEAEASAPVPQERFNLMMPRSRCGGCGHLIQWY
ENIPVVSWLFLRGRCSNCGTRISVRYSLVELITGLIGGWLIWHFGLTPQGMALVVLSWALIVLTFIDLDHQLLPDSITLP
LLWLGLLLNTQGVFTSLESAVFGAAAGYLVLWAVYWLFKLVTGKEGMGYGDFKLLAAIGAWGGVQVLPLVILLSSVVGVV
LAFSLIALRRHSAQNPLPFGPYLAIAGWIALVWGDQIISAYLGSF

Nucleotide

• Length: 858 bp

>NTDB_id=238167 CFI10_RS13900 WP_206835430.1 2899097..2899954(+) (pilD) [Marinobacterium iners strain IC961]
ATGATCGAATTGTTAATGACAGAGCCGCTGGTTGCGGCTCTTTTTGCTTTAGTTACCTCACTGCTGGTGGGCAGTTTTCT
GAATGTGGTGATACTGCGGCTGCCGGTTATGATGCAGCGCGAGTGGGATGCGATGCTGCAGGCTGAGGCTGAGGCGTCTG
CGCCCGTACCTCAGGAGCGCTTCAACCTGATGATGCCACGTTCACGATGCGGTGGGTGTGGCCACCTGATTCAATGGTAC
GAAAACATTCCAGTGGTCAGCTGGCTGTTCTTGCGTGGCCGCTGCAGTAATTGCGGCACGCGCATCTCGGTGCGTTATTC
GCTGGTCGAGCTGATCACAGGTCTGATCGGGGGCTGGTTGATCTGGCATTTTGGTCTGACACCTCAGGGCATGGCACTGG
TGGTGCTGAGCTGGGCGCTCATTGTGCTCACCTTTATCGACCTGGACCACCAACTGCTGCCCGACAGTATCACTCTGCCC
CTGTTGTGGCTGGGGCTGCTGCTGAATACACAAGGTGTATTTACTTCGCTTGAAAGTGCCGTATTCGGTGCGGCCGCCGG
CTATCTTGTACTCTGGGCCGTTTACTGGCTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGCTATGGTGACTTCAAAC
TGCTGGCTGCCATCGGTGCCTGGGGCGGGGTACAGGTACTGCCGCTGGTGATTTTGCTGTCATCGGTGGTGGGTGTCGTG
CTGGCGTTCAGCCTGATTGCATTACGTCGCCATAGCGCGCAAAATCCACTTCCGTTTGGGCCCTATCTGGCAATTGCCGG
GTGGATCGCACTGGTCTGGGGTGATCAGATCATTTCCGCTTATTTGGGGAGCTTTTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-242)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.234	100	0.533
pilD	Vibrio campbellii strain DS40M4	51.228	100	0.512
pilD	Acinetobacter baumannii D1279779	52.434	93.684	0.491
pilD	Acinetobacter nosocomialis M2	51.685	93.684	0.484
pilD	Neisseria gonorrhoeae MS11	47.67	97.895	0.467