Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CEW87_RS01275 Genome accession   NZ_CP022188
Coordinates   286426..287664 (+) Length   412 a.a.
NCBI ID   WP_108971194.1    Uniprot ID   A0A2U8GXR8
Organism   Parazoarcus communis strain TSNA42     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 281426..292664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEW87_RS01260 (CEW87_01260) - 282372..283202 (+) 831 WP_108971191.1 cytochrome C assembly family protein -
  CEW87_RS01265 (CEW87_01265) - 283356..284558 (+) 1203 WP_234421635.1 HlyC/CorC family transporter -
  CEW87_RS01270 (CEW87_01270) pilB 284688..286400 (+) 1713 WP_108971193.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CEW87_RS01275 (CEW87_01275) pilC 286426..287664 (+) 1239 WP_108971194.1 type II secretion system F family protein Machinery gene
  CEW87_RS01280 (CEW87_01280) pilD 287716..288567 (+) 852 WP_108971195.1 prepilin peptidase Machinery gene
  CEW87_RS01285 (CEW87_01285) - 288784..289065 (+) 282 WP_108971196.1 FmdB family zinc ribbon protein -
  CEW87_RS01290 (CEW87_01290) - 289090..289716 (+) 627 WP_108971197.1 DUF502 domain-containing protein -
  CEW87_RS01295 (CEW87_01295) aspS 289776..291575 (+) 1800 WP_108971198.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44656.71 Da        Isoelectric Point: 9.9104

>NTDB_id=237479 CEW87_RS01275 WP_108971194.1 286426..287664(+) (pilC) [Parazoarcus communis strain TSNA42]
MATASRTAKRRVNVGPKEELYNWEGKDKTGKIIRGEMRATGDAIVQATLRRQGVMVTKVKKQKMSRGHKITEKDIALFTR
QLATMMKSGVPLLQAFEIGIKGSGNPSLARMLNEVRTDVETGSSLSQAFSRHPVHFDKLFCNLVAAGEQAGILDNLLDRI
ATYKEKILAIKSKIKSALFYPLAVIVVAALVVAVIMLFVVPEFKNVFASFGAELPGPTLIVIAMSDFFVDFWYLVFGIIA
GTIMSIAFLYRRSSAMQIAVDRMVLKLPVVGDIILKATVARWSRTLSTMFAAGVPLVEALESVGGAAGNYVYLTATKAIQ
NEVSTGTSLTVAMQNSNVFPTMVVQMVSIGEESGQLDSMLSKVADFFEQEVDDAVAGLSTLLEPIIMVFLGVVIGGLVVA
MYLPIFKLGAVV

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=237479 CEW87_RS01275 WP_108971194.1 286426..287664(+) (pilC) [Parazoarcus communis strain TSNA42]
ATGGCGACTGCATCCCGAACTGCCAAACGCCGCGTGAACGTCGGACCGAAGGAAGAGTTGTACAACTGGGAAGGCAAGGA
CAAGACCGGGAAAATCATCCGCGGCGAGATGCGCGCCACTGGCGACGCCATCGTTCAGGCAACCTTGCGCCGCCAGGGGG
TGATGGTCACCAAGGTCAAGAAGCAGAAGATGTCCCGTGGTCACAAGATCACGGAAAAGGATATCGCCCTGTTTACTCGT
CAGTTAGCCACGATGATGAAGTCGGGCGTGCCGCTGCTGCAGGCTTTCGAGATTGGCATCAAGGGTTCGGGAAATCCCAG
TCTGGCGCGAATGCTGAACGAGGTCCGCACGGACGTCGAGACGGGCTCAAGCCTGTCACAAGCCTTCAGCAGACATCCGG
TTCACTTTGACAAGCTCTTCTGTAACCTCGTTGCCGCAGGCGAACAGGCCGGGATTCTGGATAACCTGCTCGACCGAATT
GCGACGTACAAGGAAAAAATTCTTGCCATCAAGAGCAAGATCAAGTCTGCGCTTTTCTACCCTCTAGCAGTCATCGTCGT
TGCAGCACTCGTCGTCGCCGTGATCATGCTGTTCGTCGTACCGGAGTTCAAGAACGTATTTGCCAGCTTTGGGGCCGAGC
TGCCCGGCCCGACCCTGATTGTCATCGCAATGTCCGACTTCTTTGTCGATTTCTGGTACTTGGTATTCGGCATCATTGCC
GGCACGATCATGAGCATCGCCTTCCTTTACCGGCGCTCTTCTGCAATGCAGATCGCGGTAGACAGGATGGTGCTCAAACT
TCCAGTTGTGGGCGACATCATATTGAAAGCCACGGTGGCACGCTGGTCGAGAACCCTGTCGACCATGTTCGCTGCCGGCG
TCCCGCTGGTTGAAGCACTGGAGTCTGTGGGCGGCGCAGCGGGAAACTACGTGTACCTGACGGCCACTAAGGCGATCCAG
AACGAAGTGAGCACAGGCACCAGTCTCACCGTGGCCATGCAGAACAGCAACGTATTTCCAACCATGGTGGTGCAGATGGT
GTCGATCGGCGAGGAATCCGGCCAGCTCGACAGCATGCTGTCGAAGGTTGCAGACTTTTTCGAGCAGGAGGTGGACGACG
CTGTTGCCGGCCTGTCTACGCTGCTGGAGCCGATCATTATGGTCTTCCTGGGCGTCGTGATCGGTGGCCTGGTGGTTGCC
ATGTACCTGCCGATCTTCAAACTCGGCGCCGTTGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(78-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U8GXR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

52.261

96.602

0.505
  pilC Pseudomonas stutzeri DSM 10701

51.128

96.845

0.495
  pilG Neisseria gonorrhoeae MS11

50.882

96.359

0.49
  pilG Neisseria meningitidis 44/76-A

50.378

96.359

0.485
  pilC Acinetobacter baylyi ADP1

47.317

99.515

0.471
  pilC Acinetobacter baumannii D1279779

48.615

96.359

0.468
  pilC Thermus thermophilus HB27

38.609

100

0.391
  pilC Vibrio cholerae strain A1552

40.404

96.117

0.388
  pilC Vibrio campbellii strain DS40M4

39.024

99.515

0.388

Multiple sequence alignment