Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   CEW87_RS01280 Genome accession   NZ_CP022188
Coordinates   287716..288567 (+) Length   283 a.a.
NCBI ID   WP_108971195.1    Uniprot ID   -
Organism   Parazoarcus communis strain TSNA42     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 282716..293567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEW87_RS01265 (CEW87_01265) - 283356..284558 (+) 1203 WP_234421635.1 HlyC/CorC family transporter -
  CEW87_RS01270 (CEW87_01270) pilB 284688..286400 (+) 1713 WP_108971193.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CEW87_RS01275 (CEW87_01275) pilC 286426..287664 (+) 1239 WP_108971194.1 type II secretion system F family protein Machinery gene
  CEW87_RS01280 (CEW87_01280) pilD 287716..288567 (+) 852 WP_108971195.1 prepilin peptidase Machinery gene
  CEW87_RS01285 (CEW87_01285) - 288784..289065 (+) 282 WP_108971196.1 FmdB family zinc ribbon protein -
  CEW87_RS01290 (CEW87_01290) - 289090..289716 (+) 627 WP_108971197.1 DUF502 domain-containing protein -
  CEW87_RS01295 (CEW87_01295) aspS 289776..291575 (+) 1800 WP_108971198.1 aspartate--tRNA ligase -
  CEW87_RS01300 (CEW87_01300) - 291651..292700 (-) 1050 WP_108971199.1 Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein -

Sequence

Protein


Download         Length: 283 a.a.        Molecular weight: 30843.44 Da        Isoelectric Point: 7.0280

>NTDB_id=237480 CEW87_RS01280 WP_108971195.1 287716..288567(+) (pilD) [Parazoarcus communis strain TSNA42]
MSEFLSDPLAFTPLVTLLGLFVGSFLNVVIHRLPRMMERDWQVQAAEMRGEPAPESERFNLAAPRSRCPHCGHLISALEN
IPVVSYLFLRGRCGHCSAPISRRYPMVEVLTAVLSGYAAWHFGFGLAAAGALIFLWAMIALAFIDLDTQLLPDDITLPLL
WLGLAFNLAGVYTDLPSAVVGAMAGYLTLWSIFWMFKLATGKEGMGYGDFKLLGAIGAWLGWQTLPLTILLSSVVGAVIG
ISLIAFARHGRNVPIPFGPYLATAGIIALFWGEAITQRYMGVL

Nucleotide


Download         Length: 852 bp        

>NTDB_id=237480 CEW87_RS01280 WP_108971195.1 287716..288567(+) (pilD) [Parazoarcus communis strain TSNA42]
ATGTCAGAGTTCCTGAGCGACCCGCTCGCCTTCACCCCACTCGTCACGCTGCTCGGTCTCTTTGTCGGCAGTTTCCTCAA
TGTCGTGATCCATCGCCTGCCGCGGATGATGGAGCGCGACTGGCAGGTGCAGGCGGCGGAAATGCGCGGCGAACCTGCCC
CCGAATCCGAGCGCTTCAACCTCGCTGCCCCTCGATCACGCTGCCCCCATTGCGGACACCTGATCTCGGCGCTTGAGAAC
ATCCCGGTGGTCAGCTATCTGTTCCTGCGTGGCCGTTGCGGGCACTGCTCCGCGCCGATCAGTCGCCGCTATCCCATGGT
AGAGGTGCTCACGGCCGTGCTCTCCGGCTACGCAGCCTGGCACTTCGGTTTCGGCCTGGCCGCAGCCGGCGCGTTGATCT
TCCTCTGGGCCATGATTGCCCTTGCCTTCATCGACCTTGACACTCAGCTGCTCCCGGACGACATCACGCTTCCGCTGCTC
TGGCTTGGCCTCGCGTTCAATCTCGCAGGCGTCTACACGGACCTGCCAAGCGCGGTGGTTGGTGCAATGGCAGGTTACCT
GACGCTGTGGTCGATCTTCTGGATGTTCAAGCTTGCAACCGGCAAAGAGGGCATGGGCTACGGTGACTTCAAACTCCTTG
GCGCCATTGGTGCATGGCTTGGCTGGCAAACGCTGCCGCTGACCATTCTTCTATCCTCGGTCGTCGGCGCCGTGATCGGC
ATCAGCCTGATCGCATTCGCCCGCCACGGCCGCAACGTCCCGATACCGTTCGGTCCCTACCTGGCGACGGCCGGCATCAT
CGCGCTGTTCTGGGGTGAAGCGATCACGCAGCGTTACATGGGCGTGCTCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-122)

Type IV leader peptidase family (Peptidase_A24)

(132-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

54.61

99.647

0.544
  pilD Vibrio campbellii strain DS40M4

52.837

99.647

0.527
  pilD Acinetobacter baumannii D1279779

48.41

100

0.484
  pilD Acinetobacter nosocomialis M2

48.057

100

0.481
  pilD Neisseria gonorrhoeae MS11

52.713

91.166

0.481

Multiple sequence alignment