Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CEG15_RS02465 Genome accession   NZ_CP022099
Coordinates   484151..485377 (-) Length   408 a.a.
NCBI ID   WP_088728613.1    Uniprot ID   -
Organism   Vibrio anguillarum strain S3 4/9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 479151..490377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEG15_RS02425 (CEG15_02425) rpsP 479490..479738 (+) 249 WP_010319522.1 30S ribosomal protein S16 -
  CEG15_RS02430 (CEG15_02430) rimM 479768..480322 (+) 555 WP_013857691.1 ribosome maturation factor RimM -
  CEG15_RS02435 (CEG15_02435) trmD 480350..481096 (+) 747 WP_010319524.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  CEG15_RS02440 (CEG15_02440) rplS 481138..481491 (+) 354 WP_010319525.1 50S ribosomal protein L19 -
  CEG15_RS02445 (CEG15_02445) yacG 481572..481769 (-) 198 WP_010319526.1 DNA gyrase inhibitor YacG -
  CEG15_RS02450 (CEG15_02450) zapD 481859..482599 (-) 741 WP_013857689.1 cell division protein ZapD -
  CEG15_RS02455 (CEG15_02455) coaE 482632..483240 (-) 609 WP_064624393.1 dephospho-CoA kinase -
  CEG15_RS02460 (CEG15_02460) pilD 483231..484112 (-) 882 WP_088720881.1 prepilin peptidase Machinery gene
  CEG15_RS02465 (CEG15_02465) pilC 484151..485377 (-) 1227 WP_088728613.1 type II secretion system F family protein Machinery gene
  CEG15_RS02470 (CEG15_02470) pilB 485420..487108 (-) 1689 WP_088720882.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CEG15_RS02475 (CEG15_02475) pilA 487118..487543 (-) 426 WP_010319532.1 pilin Machinery gene
  CEG15_RS02480 (CEG15_02480) nadC 487802..488689 (-) 888 WP_017043701.1 carboxylating nicotinate-nucleotide diphosphorylase -
  CEG15_RS02485 (CEG15_02485) ampD 488814..489365 (+) 552 WP_232471667.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  CEG15_RS02490 (CEG15_02490) fldB 489387..489905 (-) 519 WP_088720885.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45341.67 Da        Isoelectric Point: 10.3905

>NTDB_id=236720 CEG15_RS02465 WP_088728613.1 484151..485377(-) (pilC) [Vibrio anguillarum strain S3 4/9]
MNTKIKSELKNYRWKGINSSGKKVSGQTLALTELEVRDKLKEQHIQIKKIKKGGVSFITRLTHRVKARDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILSQVTKGVEAGTPISKAMRTASTHFDTLYVDLIHTGEQSGNLAEVFERLATYRE
KSEQLRAKVIKALIYPTMVVLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQSYSLWVLIIIILTTIA
VKAVRQKSFLIRLKTSRLGLKFPILGGVIGKASIAKFSRTLATSFSAGIPILASLKTTAKTAGNVHFETAINEVYRDTAA
GMPMYIAMRNTEAFPEMVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLDKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=236720 CEG15_RS02465 WP_088728613.1 484151..485377(-) (pilC) [Vibrio anguillarum strain S3 4/9]
ATGAACACAAAAATCAAATCAGAACTCAAAAATTATCGTTGGAAAGGCATCAATAGTTCGGGCAAAAAAGTATCTGGCCA
AACTCTCGCTTTAACCGAACTGGAAGTGCGTGACAAACTTAAAGAGCAGCACATTCAAATCAAAAAAATCAAAAAAGGGG
GCGTCTCTTTTATCACCCGCTTGACTCATCGCGTGAAGGCCAGAGACATCACCATTCTGACACGCCAATTAGCGACCATG
CTGACCACGGGCGTGCCCATCGTGCAAGCCTTAAAACTGGTTGGAGATAACCACCGCAAAGCCGAAATGAAATCCATTTT
GTCGCAAGTCACCAAAGGGGTTGAAGCCGGAACGCCAATTTCCAAAGCGATGCGTACCGCCAGCACCCATTTCGATACCT
TGTATGTTGATCTCATTCACACAGGTGAACAGTCAGGTAACTTGGCTGAAGTGTTTGAGCGGCTAGCGACTTATCGAGAA
AAAAGTGAACAACTGCGCGCTAAAGTCATTAAAGCGCTCATCTACCCAACCATGGTGGTGTTGGTCGCGTTAGGTGTTTC
TTACTTAATGCTTACTATGGTGATCCCTGAGTTTGAAAGCATGTTCAAAGGATTCGGAGCCGAATTACCTTGGTTTACAC
AGCAAGTATTGAAACTCTCTCATTGGGTGCAAAGTTACAGTTTGTGGGTACTCATCATCATAATCCTCACCACAATTGCC
GTGAAAGCAGTACGCCAAAAATCTTTTTTAATACGCTTAAAAACCAGCCGATTAGGATTAAAGTTTCCCATTCTTGGCGG
GGTGATAGGCAAAGCCTCTATTGCTAAATTCAGTCGCACACTCGCCACCAGTTTTAGTGCAGGCATTCCGATTTTAGCCA
GCTTAAAAACCACCGCCAAAACCGCTGGCAATGTCCATTTTGAGACGGCGATTAATGAGGTCTATCGTGATACAGCAGCC
GGTATGCCAATGTATATTGCGATGCGTAATACCGAAGCCTTTCCTGAAATGGTGCTGCAAATGGTTATGATTGGTGAAGA
ATCAGGCCGATTGGATGACATGCTCAATAAAGTCGCCACCATTTACGAATTTGAAGTTGATAATACCGTCGATAACTTAG
ACAAAATTCTCGAACCATTGATCATTGTCTTTTTGGGTACGGTGGTCGGCGGTTTGGTGGTGGCAATGTACTTGCCCATC
TTTAACTTAATGAGTGTATTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

88.5

98.039

0.868
  pilC Vibrio campbellii strain DS40M4

75.248

99.02

0.745
  pilC Acinetobacter baylyi ADP1

42.211

97.549

0.412
  pilC Acinetobacter baumannii D1279779

40.931

100

0.409
  pilC Pseudomonas stutzeri DSM 10701

41.162

97.059

0.4
  pilG Neisseria gonorrhoeae MS11

40.299

98.529

0.397
  pilG Neisseria meningitidis 44/76-A

39.95

98.775

0.395
  pilC Legionella pneumophila strain ERS1305867

39.651

98.284

0.39

Multiple sequence alignment