Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | CEG15_RS02475 | Genome accession | NZ_CP022099 |
| Coordinates | 487118..487543 (-) | Length | 141 a.a. |
| NCBI ID | WP_010319532.1 | Uniprot ID | - |
| Organism | Vibrio anguillarum strain S3 4/9 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 482118..492543
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CEG15_RS02455 (CEG15_02455) | coaE | 482632..483240 (-) | 609 | WP_064624393.1 | dephospho-CoA kinase | - |
| CEG15_RS02460 (CEG15_02460) | pilD | 483231..484112 (-) | 882 | WP_088720881.1 | prepilin peptidase | Machinery gene |
| CEG15_RS02465 (CEG15_02465) | pilC | 484151..485377 (-) | 1227 | WP_088728613.1 | type II secretion system F family protein | Machinery gene |
| CEG15_RS02470 (CEG15_02470) | pilB | 485420..487108 (-) | 1689 | WP_088720882.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| CEG15_RS02475 (CEG15_02475) | pilA | 487118..487543 (-) | 426 | WP_010319532.1 | pilin | Machinery gene |
| CEG15_RS02480 (CEG15_02480) | nadC | 487802..488689 (-) | 888 | WP_017043701.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| CEG15_RS02485 (CEG15_02485) | ampD | 488814..489365 (+) | 552 | WP_232471667.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| CEG15_RS02490 (CEG15_02490) | fldB | 489387..489905 (-) | 519 | WP_088720885.1 | flavodoxin FldB | - |
| CEG15_RS02495 (CEG15_02495) | xerD | 490058..490966 (+) | 909 | WP_013857679.1 | site-specific tyrosine recombinase XerD | - |
| CEG15_RS02500 (CEG15_02500) | - | 490980..491753 (+) | 774 | WP_013857678.1 | thioredoxin fold domain-containing protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 14583.69 Da Isoelectric Point: 7.7777
>NTDB_id=236722 CEG15_RS02475 WP_010319532.1 487118..487543(-) (pilA) [Vibrio anguillarum strain S3 4/9]
MNTNKKTKQSGFTLIELMIVVAIIGVLSAIAVPAYKNYVAKSEVASAIATMKALITPAEITYQDKGILAAATEPTDLGIS
AGSNSLGTISIPSNNNIKFEFGEKSAINGAYLTFSRDANTGWSCKATSGGVSNMPAIDGCS
MNTNKKTKQSGFTLIELMIVVAIIGVLSAIAVPAYKNYVAKSEVASAIATMKALITPAEITYQDKGILAAATEPTDLGIS
AGSNSLGTISIPSNNNIKFEFGEKSAINGAYLTFSRDANTGWSCKATSGGVSNMPAIDGCS
Nucleotide
Download Length: 426 bp
>NTDB_id=236722 CEG15_RS02475 WP_010319532.1 487118..487543(-) (pilA) [Vibrio anguillarum strain S3 4/9]
ATGAACACAAATAAGAAAACGAAACAAAGTGGTTTTACCTTAATTGAATTGATGATTGTGGTAGCGATTATTGGCGTACT
CTCTGCGATTGCCGTTCCTGCTTATAAAAACTATGTAGCTAAAAGTGAAGTAGCTTCAGCAATAGCAACAATGAAAGCCT
TAATTACCCCTGCCGAGATTACCTATCAAGACAAAGGTATTTTGGCCGCTGCTACTGAACCTACTGACTTAGGAATATCA
GCAGGTTCAAACAGTTTAGGAACCATATCCATCCCAAGTAATAACAATATAAAATTCGAATTTGGAGAAAAAAGTGCAAT
CAACGGTGCATACCTAACATTCTCACGAGATGCAAATACAGGTTGGTCATGTAAAGCAACTTCTGGTGGTGTAAGTAATA
TGCCAGCAATTGATGGCTGCTCATAA
ATGAACACAAATAAGAAAACGAAACAAAGTGGTTTTACCTTAATTGAATTGATGATTGTGGTAGCGATTATTGGCGTACT
CTCTGCGATTGCCGTTCCTGCTTATAAAAACTATGTAGCTAAAAGTGAAGTAGCTTCAGCAATAGCAACAATGAAAGCCT
TAATTACCCCTGCCGAGATTACCTATCAAGACAAAGGTATTTTGGCCGCTGCTACTGAACCTACTGACTTAGGAATATCA
GCAGGTTCAAACAGTTTAGGAACCATATCCATCCCAAGTAATAACAATATAAAATTCGAATTTGGAGAAAAAAGTGCAAT
CAACGGTGCATACCTAACATTCTCACGAGATGCAAATACAGGTTGGTCATGTAAAGCAACTTCTGGTGGTGTAAGTAATA
TGCCAGCAATTGATGGCTGCTCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
54.861 |
100 |
0.56 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
37.419 |
100 |
0.411 |
| pilA | Vibrio cholerae strain A1552 |
37.419 |
100 |
0.411 |
| pilA | Vibrio cholerae C6706 |
37.419 |
100 |
0.411 |
| pilA | Pseudomonas aeruginosa PAK |
42.424 |
93.617 |
0.397 |