Detailed information NTG0236719

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CEG15_RS02460
• Genome accession: NZ_CP022099
• Coordinates: 483231..484112 (-)
• Length: 293 a.a.
• NCBI ID: WP_088720881.1
• Uniprot ID: -
• Organism: Vibrio anguillarum strain S3 4/9
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 478231..489112

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CEG15_RS02425 (CEG15_02425)	rpsP	479490..479738 (+)	249	WP_010319522.1	30S ribosomal protein S16	-
CEG15_RS02430 (CEG15_02430)	rimM	479768..480322 (+)	555	WP_013857691.1	ribosome maturation factor RimM	-
CEG15_RS02435 (CEG15_02435)	trmD	480350..481096 (+)	747	WP_010319524.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
CEG15_RS02440 (CEG15_02440)	rplS	481138..481491 (+)	354	WP_010319525.1	50S ribosomal protein L19	-
CEG15_RS02445 (CEG15_02445)	yacG	481572..481769 (-)	198	WP_010319526.1	DNA gyrase inhibitor YacG	-
CEG15_RS02450 (CEG15_02450)	zapD	481859..482599 (-)	741	WP_013857689.1	cell division protein ZapD	-
CEG15_RS02455 (CEG15_02455)	coaE	482632..483240 (-)	609	WP_064624393.1	dephospho-CoA kinase	-
CEG15_RS02460 (CEG15_02460)	pilD	483231..484112 (-)	882	WP_088720881.1	prepilin peptidase	Machinery gene
CEG15_RS02465 (CEG15_02465)	pilC	484151..485377 (-)	1227	WP_088728613.1	type II secretion system F family protein	Machinery gene
CEG15_RS02470 (CEG15_02470)	pilB	485420..487108 (-)	1689	WP_088720882.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CEG15_RS02475 (CEG15_02475)	pilA	487118..487543 (-)	426	WP_010319532.1	pilin	Machinery gene
CEG15_RS02480 (CEG15_02480)	nadC	487802..488689 (-)	888	WP_017043701.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 32860.15 Da
• Isoelectric Point: 7.2157

>NTDB_id=236719 CEG15_RS02460 WP_088720881.1 483231..484112(-) (pilD) [Vibrio anguillarum strain S3 4/9]
MEVFIYYPWLFPLFAALFGLIVGSFLNVVIYRLPKIMEREWRQECADCFPEYHIAPPEGQLTLSVPRSSCPHCDAPIRII
DNIPLLSWLFLKGKCSRCQGPISARYPLIELLTASMSFVVASHFGFSYFSLALLFFTFVLIAATFIDFDTMLLPDKLTLP
LLWAGLSLSLMHISPVSLQDAVIGAIAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAALGAWLGWQYLPIIILMSSVVGI
VFGLIQLRLQKKGIDKAFPFGPYLAIAGWLTLLWGNDIMSWYLGSIMGLSSWG

Nucleotide

• Length: 882 bp

>NTDB_id=236719 CEG15_RS02460 WP_088720881.1 483231..484112(-) (pilD) [Vibrio anguillarum strain S3 4/9]
ATGGAAGTTTTTATTTATTACCCTTGGCTCTTTCCACTTTTTGCAGCGTTGTTTGGCTTAATCGTGGGGAGTTTTCTCAA
TGTGGTCATTTATCGTCTACCCAAAATCATGGAGCGAGAATGGCGACAAGAGTGCGCTGACTGCTTTCCCGAATACCACA
TTGCGCCACCGGAAGGGCAACTCACGCTCAGTGTCCCCCGTTCTAGCTGCCCACACTGTGATGCGCCAATCCGTATTATT
GACAATATTCCGCTACTCAGTTGGCTCTTTTTAAAAGGGAAATGTTCCCGTTGCCAAGGCCCGATCAGTGCACGCTATCC
TTTGATTGAACTGCTCACCGCCAGTATGAGCTTTGTCGTGGCTAGCCACTTCGGTTTTAGTTATTTTTCACTAGCGCTAT
TGTTTTTCACTTTTGTGCTCATCGCGGCGACGTTTATCGATTTCGATACCATGCTGTTACCCGACAAGCTGACACTGCCA
CTACTGTGGGCGGGCCTCAGCTTATCATTGATGCACATTAGCCCAGTCAGTTTGCAAGATGCGGTGATCGGCGCCATTGC
TGGCTATCTGAGCTTATGGTCGGTCTATTGGCTGTTTAAACTCGTCACAGGCAAAGAAGGAATGGGTTATGGCGATTTCA
AACTGCTGGCTGCTCTCGGCGCTTGGTTGGGCTGGCAATATCTGCCCATCATCATTCTCATGTCATCTGTGGTTGGCATT
GTCTTTGGCCTAATTCAATTGCGCTTGCAAAAAAAAGGGATCGACAAAGCCTTTCCTTTTGGCCCCTATCTCGCCATTGC
TGGCTGGCTAACCTTGTTGTGGGGTAACGATATTATGAGTTGGTATTTAGGTTCAATTATGGGGTTATCGTCATGGGGTT
AG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	76.736	98.294	0.754
pilD	Vibrio campbellii strain DS40M4	76.125	98.635	0.751
pilD	Acinetobacter nosocomialis M2	56.458	92.491	0.522
pilD	Acinetobacter baumannii D1279779	56.089	92.491	0.519
pilD	Neisseria gonorrhoeae MS11	46.552	98.976	0.461