Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SE071780_RS10625 Genome accession   NZ_CP021972
Coordinates   2162216..2162611 (-) Length   131 a.a.
NCBI ID   WP_012678670.1    Uniprot ID   A0A7Z9D3W7
Organism   Streptococcus equi subsp. equi strain ATCC 39506     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2157216..2167611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE071780_RS10605 (SE071780_02214) - 2158004..2158807 (-) 804 WP_015898645.1 ATP-binding cassette domain-containing protein -
  SE071780_RS10610 (SE071780_02215) - 2158816..2159700 (-) 885 WP_015898646.1 ABC transporter permease -
  SE071780_RS10615 (SE071780_02216) - 2159815..2160777 (-) 963 WP_015898647.1 ABC transporter substrate-binding protein -
  SE071780_RS10620 (SE071780_02217) - 2160795..2161769 (-) 975 WP_015898648.1 ABC transporter substrate-binding protein -
  SE071780_RS10625 (SE071780_02218) ssbA 2162216..2162611 (-) 396 WP_012678670.1 single-stranded DNA-binding protein Machinery gene
  SE071780_RS10630 (SE071780_02219) - 2162723..2163436 (+) 714 WP_015898649.1 class I SAM-dependent methyltransferase -
  SE071780_RS10635 (SE071780_02220) ytpR 2163739..2164365 (-) 627 WP_015898650.1 YtpR family tRNA-binding protein -
  SE071780_RS10640 (SE071780_02221) - 2164380..2164697 (-) 318 WP_015898651.1 thioredoxin family protein -
  SE071780_RS10645 (SE071780_02222) - 2164694..2164978 (-) 285 WP_279526906.1 DUF4651 domain-containing protein -
  SE071780_RS10650 (SE071780_02223) pepA 2165386..2166453 (+) 1068 WP_015898653.1 glutamyl aminopeptidase -
  SE071780_RS10655 (SE071780_02224) proC 2166537..2167310 (+) 774 WP_015898654.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14768.92 Da        Isoelectric Point: 8.9315

>NTDB_id=235457 SE071780_RS10625 WP_012678670.1 2162216..2162611(-) (ssbA) [Streptococcus equi subsp. equi strain ATCC 39506]
MYNKVILIGRLVAKPELNKTLTDKQVVRFTLAVNRRFKTTTGEREVDFINAVAWGGLAETLASYASKGSLLSLDGELRTR
KYDKAGQTHFVTEVLCHSFQLLESRAQRAIRENNAANDLIDLALEEEKLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=235457 SE071780_RS10625 WP_012678670.1 2162216..2162611(-) (ssbA) [Streptococcus equi subsp. equi strain ATCC 39506]
ATGTACAATAAAGTAATCTTGATAGGCCGTTTAGTGGCCAAGCCAGAATTAAACAAGACATTAACGGATAAGCAGGTCGT
TCGATTTACCTTAGCAGTTAATCGTCGGTTTAAGACGACGACTGGTGAGCGTGAGGTGGATTTTATCAATGCTGTTGCTT
GGGGAGGTTTGGCTGAAACCTTGGCTTCCTATGCTAGCAAGGGGAGTCTGCTGTCACTTGATGGCGAGCTTCGCACACGA
AAATATGACAAGGCGGGTCAGACTCATTTTGTGACAGAGGTTTTGTGTCATTCTTTTCAATTGCTGGAAAGTCGAGCGCA
ACGAGCTATACGTGAAAACAACGCTGCTAATGATTTGATTGATTTGGCTTTAGAGGAGGAAAAGCTTCCCTTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

76.336

100

0.763
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

44.444

89.313

0.397

Multiple sequence alignment