Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | CCZ24_RS09590 | Genome accession | NZ_CP021773 |
| Coordinates | 1880810..1881205 (-) | Length | 131 a.a. |
| NCBI ID | WP_000282447.1 | Uniprot ID | A0AAV3JLT6 |
| Organism | Streptococcus agalactiae strain B105 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1836817..1887464 | 1880810..1881205 | within | 0 |
Gene organization within MGE regions
Location: 1836817..1887464
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCZ24_RS09355 (CCZ24_09210) | - | 1836817..1837497 (-) | 681 | WP_014293938.1 | IS6-like element IS1216 family transposase | - |
| CCZ24_RS09360 (CCZ24_09215) | - | 1837563..1838309 (+) | 747 | Protein_1752 | restriction endonuclease subunit S | - |
| CCZ24_RS09365 (CCZ24_09220) | - | 1838263..1838793 (-) | 531 | Protein_1753 | restriction endonuclease subunit S | - |
| CCZ24_RS09370 (CCZ24_09225) | psrA | 1838876..1839673 (-) | 798 | WP_000651186.1 | tyrosine-type DNA invertase PsrA | - |
| CCZ24_RS09375 (CCZ24_09230) | - | 1839722..1841254 (-) | 1533 | WP_000187193.1 | restriction endonuclease subunit S | - |
| CCZ24_RS09380 (CCZ24_09235) | - | 1841254..1842717 (-) | 1464 | WP_000029031.1 | class I SAM-dependent DNA methyltransferase | - |
| CCZ24_RS09385 (CCZ24_09240) | - | 1842730..1845054 (-) | 2325 | WP_000190122.1 | DEAD/DEAH box helicase family protein | - |
| CCZ24_RS09390 (CCZ24_09245) | - | 1845398..1845754 (-) | 357 | WP_000797245.1 | hypothetical protein | - |
| CCZ24_RS09395 (CCZ24_09250) | - | 1845751..1846116 (-) | 366 | WP_000230298.1 | hypothetical protein | - |
| CCZ24_RS09400 (CCZ24_09255) | - | 1846109..1846399 (-) | 291 | WP_000158581.1 | DUF5962 family protein | - |
| CCZ24_RS09405 (CCZ24_09260) | - | 1846410..1847264 (-) | 855 | WP_000005759.1 | phage replisome organizer N-terminal domain-containing protein | - |
| CCZ24_RS09410 (CCZ24_09265) | - | 1847276..1847560 (-) | 285 | WP_001287945.1 | hypothetical protein | - |
| CCZ24_RS09415 (CCZ24_09270) | - | 1847707..1848225 (+) | 519 | WP_000181342.1 | helix-turn-helix transcriptional regulator | - |
| CCZ24_RS09420 (CCZ24_09275) | - | 1848280..1849434 (+) | 1155 | WP_000110711.1 | site-specific integrase | - |
| CCZ24_RS09425 (CCZ24_09280) | rpsI | 1849580..1849972 (-) | 393 | WP_000035940.1 | 30S ribosomal protein S9 | - |
| CCZ24_RS09430 (CCZ24_09285) | rplM | 1849993..1850439 (-) | 447 | WP_001867156.1 | 50S ribosomal protein L13 | - |
| CCZ24_RS09435 (CCZ24_09290) | - | 1850664..1850783 (-) | 120 | Protein_1767 | helix-turn-helix domain-containing protein | - |
| CCZ24_RS09445 (CCZ24_09305) | - | 1851320..1852180 (-) | 861 | WP_047207218.1 | DegV family protein | - |
| CCZ24_RS09450 (CCZ24_09310) | - | 1852273..1852791 (-) | 519 | WP_000716636.1 | NYN domain-containing protein | - |
| CCZ24_RS09455 (CCZ24_09315) | rlmB | 1852788..1853543 (-) | 756 | WP_000178019.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| CCZ24_RS09460 (CCZ24_09320) | - | 1853646..1854032 (-) | 387 | WP_000568029.1 | Mini-ribonuclease 3 | - |
| CCZ24_RS09465 (CCZ24_09325) | cysS | 1854025..1855368 (-) | 1344 | WP_000591129.1 | cysteine--tRNA ligase | - |
| CCZ24_RS09470 (CCZ24_09330) | - | 1855365..1855547 (-) | 183 | WP_000656477.1 | hypothetical protein | - |
| CCZ24_RS09475 (CCZ24_09335) | cysE | 1855557..1856141 (-) | 585 | WP_000539954.1 | serine O-acetyltransferase | - |
| CCZ24_RS09480 (CCZ24_09340) | - | 1856150..1856902 (-) | 753 | WP_000204780.1 | SseB family protein | - |
| CCZ24_RS09485 (CCZ24_09345) | pnp | 1856904..1859033 (-) | 2130 | WP_000043858.1 | polyribonucleotide nucleotidyltransferase | - |
| CCZ24_RS09490 (CCZ24_09350) | rpsO | 1859413..1859682 (-) | 270 | WP_001018249.1 | 30S ribosomal protein S15 | - |
| CCZ24_RS09495 (CCZ24_09355) | - | 1859770..1861029 (-) | 1260 | WP_001203077.1 | ferric reductase-like transmembrane domain-containing protein | - |
| CCZ24_RS09500 (CCZ24_09360) | - | 1861138..1862067 (-) | 930 | WP_001203826.1 | transketolase C-terminal domain-containing protein | - |
| CCZ24_RS09505 (CCZ24_09365) | - | 1862064..1862921 (-) | 858 | WP_000203492.1 | transketolase | - |
| CCZ24_RS09510 (CCZ24_09370) | - | 1862924..1864279 (-) | 1356 | WP_000677346.1 | PTS ascorbate transporter subunit IIC | - |
| CCZ24_RS09515 (CCZ24_09375) | - | 1864292..1864576 (-) | 285 | WP_000944235.1 | PTS sugar transporter subunit IIB | - |
| CCZ24_RS09520 (CCZ24_09380) | - | 1864579..1866615 (-) | 2037 | WP_000228191.1 | BglG family transcription antiterminator | - |
| CCZ24_RS09525 (CCZ24_09385) | treC | 1866831..1868456 (-) | 1626 | WP_000151022.1 | alpha,alpha-phosphotrehalase | - |
| CCZ24_RS09530 (CCZ24_09390) | treP | 1868678..1870708 (-) | 2031 | WP_000434617.1 | PTS system trehalose-specific EIIBC component | - |
| CCZ24_RS09535 (CCZ24_09395) | - | 1870990..1871616 (-) | 627 | WP_000171304.1 | ABC transporter ATP-binding protein | - |
| CCZ24_RS09540 (CCZ24_09400) | - | 1871600..1872403 (-) | 804 | WP_000140980.1 | ABC transporter ATP-binding protein | - |
| CCZ24_RS09545 (CCZ24_09405) | - | 1872415..1873236 (-) | 822 | WP_000603397.1 | ABC transporter permease | - |
| CCZ24_RS09550 (CCZ24_09410) | - | 1873233..1874210 (-) | 978 | WP_071659967.1 | ABC transporter permease | - |
| CCZ24_RS09555 (CCZ24_09415) | - | 1874323..1875951 (-) | 1629 | WP_000170506.1 | ABC transporter substrate-binding protein | - |
| CCZ24_RS09565 (CCZ24_09425) | lrgB | 1876194..1876922 (-) | 729 | WP_000421727.1 | antiholin-like protein LrgB | - |
| CCZ24_RS09570 (CCZ24_09430) | - | 1876924..1877379 (-) | 456 | WP_000683316.1 | CidA/LrgA family protein | - |
| CCZ24_RS09575 (CCZ24_09435) | - | 1877549..1878289 (-) | 741 | WP_000697627.1 | LytTR family transcriptional regulator DNA-binding domain-containing protein | - |
| CCZ24_RS09580 (CCZ24_09440) | - | 1878270..1880015 (-) | 1746 | WP_000930332.1 | LytS/YhcK type 5TM receptor domain-containing protein | - |
| CCZ24_RS09585 (CCZ24_09445) | - | 1880042..1880686 (-) | 645 | WP_000416617.1 | HAD family hydrolase | - |
| CCZ24_RS09590 (CCZ24_09450) | ssbA | 1880810..1881205 (-) | 396 | WP_000282447.1 | single-stranded DNA-binding protein | Machinery gene |
| CCZ24_RS09595 (CCZ24_09455) | - | 1881286..1882002 (+) | 717 | WP_000186176.1 | class I SAM-dependent methyltransferase | - |
| CCZ24_RS09600 (CCZ24_09460) | ytpR | 1882056..1882682 (-) | 627 | WP_000578325.1 | YtpR family tRNA-binding protein | - |
| CCZ24_RS09605 (CCZ24_09465) | - | 1882715..1883038 (-) | 324 | WP_000602780.1 | thioredoxin family protein | - |
| CCZ24_RS09610 (CCZ24_09470) | - | 1883035..1883319 (-) | 285 | WP_000791273.1 | DUF4651 domain-containing protein | - |
| CCZ24_RS09615 (CCZ24_09475) | - | 1883480..1883719 (+) | 240 | WP_000660177.1 | hypothetical protein | - |
| CCZ24_RS09620 (CCZ24_09480) | pepA | 1883904..1884971 (+) | 1068 | WP_001281321.1 | glutamyl aminopeptidase | - |
| CCZ24_RS09625 (CCZ24_09485) | proC | 1885041..1885811 (+) | 771 | WP_001869147.1 | pyrroline-5-carboxylate reductase | - |
| CCZ24_RS09630 (CCZ24_09490) | - | 1885832..1886497 (-) | 666 | WP_000008107.1 | type II CAAX endopeptidase family protein | - |
| CCZ24_RS09635 (CCZ24_09495) | - | 1886566..1887021 (-) | 456 | WP_000905672.1 | hypothetical protein | - |
| CCZ24_RS12000 (CCZ24_09500) | - | 1887062..1887199 (-) | 138 | WP_001869149.1 | hypothetical protein | - |
| CCZ24_RS09645 (CCZ24_09505) | - | 1887258..1887464 (-) | 207 | WP_000798241.1 | helix-turn-helix transcriptional regulator | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 14774.80 Da Isoelectric Point: 7.0189
>NTDB_id=233362 CCZ24_RS09590 WP_000282447.1 1880810..1881205(-) (ssbA) [Streptococcus agalactiae strain B105]
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWGRLAETLASYGTKGSLISIDGELRTR
KYEKDGQTHYITEVLASSFQLLESRAQRAMRENNVSGDLSDLVLEEEELPF
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWGRLAETLASYGTKGSLISIDGELRTR
KYEKDGQTHYITEVLASSFQLLESRAQRAMRENNVSGDLSDLVLEEEELPF
Nucleotide
Download Length: 396 bp
>NTDB_id=233362 CCZ24_RS09590 WP_000282447.1 1880810..1881205(-) (ssbA) [Streptococcus agalactiae strain B105]
ATGTATAATAAAGTTATTATGATTGGGCGTCTAACAGCAAAGCCTGAGATGGTAAAAACACCAACTGACAAGTCAGTAAC
GCGTGCAACTGTTGCTGTTAATAGACGCTTTAAAGGAAGTAATGGTGAGCGTGAAGCAGATTTTATTAATGTGGTTATGT
GGGGTCGTCTAGCGGAAACCCTTGCGAGCTATGGGACAAAGGGCTCTTTAATTTCAATAGATGGTGAATTGCGTACGCGC
AAGTACGAAAAGGATGGTCAAACGCACTATATCACTGAAGTATTAGCATCATCATTTCAGTTGTTAGAAAGCCGTGCCCA
ACGTGCTATGCGTGAAAATAATGTTTCTGGTGATTTGTCAGATTTAGTATTGGAAGAAGAGGAGCTCCCCTTTTAA
ATGTATAATAAAGTTATTATGATTGGGCGTCTAACAGCAAAGCCTGAGATGGTAAAAACACCAACTGACAAGTCAGTAAC
GCGTGCAACTGTTGCTGTTAATAGACGCTTTAAAGGAAGTAATGGTGAGCGTGAAGCAGATTTTATTAATGTGGTTATGT
GGGGTCGTCTAGCGGAAACCCTTGCGAGCTATGGGACAAAGGGCTCTTTAATTTCAATAGATGGTGAATTGCGTACGCGC
AAGTACGAAAAGGATGGTCAAACGCACTATATCACTGAAGTATTAGCATCATCATTTCAGTTGTTAGAAAGCCGTGCCCA
ACGTGCTATGCGTGAAAATAATGTTTCTGGTGATTTGTCAGATTTAGTATTGGAAGAAGAGGAGCTCCCCTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Streptococcus mutans UA159 |
80.916 |
100 |
0.809 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
77.863 |
100 |
0.779 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
77.863 |
100 |
0.779 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
77.863 |
100 |
0.779 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
77.099 |
100 |
0.771 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
77.099 |
100 |
0.771 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
76.336 |
100 |
0.763 |
| ssbB/cilA | Streptococcus mitis SK321 |
76.336 |
100 |
0.763 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
60.526 |
87.023 |
0.527 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.943 |
80.916 |
0.412 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.018 |
86.26 |
0.397 |