Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CDA09_RS17705 Genome accession   NZ_CP021731
Coordinates   3827548..3828783 (+) Length   411 a.a.
NCBI ID   WP_121429856.1    Uniprot ID   -
Organism   Azoarcus sp. DN11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3822548..3833783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDA09_RS17685 (CDA09_17660) - 3822683..3823453 (-) 771 WP_121429852.1 EI24 domain-containing protein -
  CDA09_RS17690 (CDA09_17665) ffh 3823468..3824826 (-) 1359 WP_121429853.1 signal recognition particle protein -
  CDA09_RS17695 (CDA09_17670) ccsA 3824869..3825696 (+) 828 WP_121429854.1 cytochrome c biogenesis protein CcsA -
  CDA09_RS17700 (CDA09_17675) pilB 3825810..3827531 (+) 1722 WP_121429855.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CDA09_RS17705 (CDA09_17680) pilC 3827548..3828783 (+) 1236 WP_121429856.1 type II secretion system F family protein Machinery gene
  CDA09_RS17710 (CDA09_17685) pilD 3828839..3829690 (+) 852 WP_121429857.1 A24 family peptidase Machinery gene
  CDA09_RS17715 (CDA09_17690) - 3829814..3830077 (+) 264 WP_121429858.1 zinc ribbon domain-containing protein -
  CDA09_RS17720 (CDA09_17695) - 3830093..3830719 (+) 627 WP_121429859.1 DUF502 domain-containing protein -
  CDA09_RS17725 (CDA09_17700) aspS 3830763..3832562 (+) 1800 WP_121429860.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 44275.04 Da        Isoelectric Point: 9.8867

>NTDB_id=232923 CDA09_RS17705 WP_121429856.1 3827548..3828783(+) (pilC) [Azoarcus sp. DN11]
MATTTTRARGATVGPKEILYTWEGKDKNGKQVRGEMRASGESVVQATLRRQGVQVLKVKKAKMSRGHKITDKDIALFTRQ
LATMMKSGVPLLQAFDIGIKGSGNPSLARLLNEVRNDVETGSSLSQAFSRHPVYFDKLFCNLVGAGEQAGILDGLLDRIA
TYKEKILAIKGKIKSAMFYPMAVIVVAAIVVTVIMLFVVPEFKKVFASFGAELPAPTMIVIGMSDAFVQYWYVVFGIIAG
VITGISYTYKRSTAMQIAVDRAILKLPVVGEIVLKATIARWTRTLSTMFAAGVPLVEALDSVGGASGNYVYQTATKQIQT
EVSTGTSLTVAMQNSSVFPSMVVQMVSIGEESGQLDSMLGKVADFFEQEVDDAVAGLSTLLEPLIMVFLGTVIGGLVVAM
YLPIFKLGQVV

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=232923 CDA09_RS17705 WP_121429856.1 3827548..3828783(+) (pilC) [Azoarcus sp. DN11]
ATGGCGACCACCACCACCCGGGCCAGAGGCGCCACTGTCGGCCCCAAGGAAATCCTCTACACGTGGGAAGGCAAGGACAA
GAATGGCAAGCAGGTACGCGGCGAAATGCGCGCGAGCGGCGAGTCCGTGGTCCAGGCCACCCTGCGCCGCCAGGGCGTGC
AGGTCCTCAAGGTCAAGAAAGCCAAGATGTCGCGTGGCCACAAGATCACGGACAAGGACATCGCACTCTTCACGCGCCAG
CTGGCGACCATGATGAAGTCCGGCGTCCCGCTGCTGCAGGCCTTCGACATCGGCATCAAGGGCTCGGGAAACCCCAGCCT
CGCACGCCTGCTGAACGAAGTCCGCAACGACGTCGAAACGGGCTCCAGCCTGTCCCAGGCCTTCAGCCGCCACCCCGTCT
ATTTCGACAAGCTGTTCTGCAACCTGGTGGGGGCTGGCGAACAGGCCGGTATTCTCGACGGGCTGCTCGACCGCATCGCG
ACGTACAAGGAAAAAATTCTCGCGATCAAGGGCAAGATCAAGTCGGCGATGTTCTATCCGATGGCGGTCATCGTGGTCGC
GGCCATCGTCGTGACCGTGATCATGCTGTTCGTGGTCCCCGAGTTCAAGAAGGTGTTCGCGAGCTTCGGCGCCGAACTTC
CTGCGCCGACGATGATCGTGATCGGCATGTCCGACGCCTTCGTCCAATACTGGTACGTCGTGTTCGGCATCATCGCGGGC
GTCATCACCGGAATCAGCTATACGTACAAGCGCTCGACAGCGATGCAGATCGCGGTTGACCGCGCCATCCTCAAACTGCC
CGTGGTCGGCGAGATCGTCCTCAAGGCGACCATCGCACGCTGGACGCGCACACTCTCGACGATGTTCGCCGCGGGCGTGC
CGCTGGTCGAAGCACTCGACTCCGTCGGTGGCGCATCGGGCAACTACGTCTACCAGACGGCGACCAAGCAGATCCAGACC
GAGGTCAGCACCGGCACCAGTCTGACCGTGGCGATGCAGAACTCCAGCGTCTTCCCGAGCATGGTCGTGCAGATGGTGTC
GATCGGCGAGGAGTCGGGCCAACTCGACTCGATGCTCGGCAAGGTTGCCGACTTCTTCGAACAGGAAGTCGACGACGCCG
TCGCCGGCCTGTCGACACTGCTTGAACCGCTCATCATGGTCTTCCTTGGTACGGTCATCGGCGGCCTCGTCGTCGCGATG
TACCTGCCGATCTTCAAGCTCGGCCAGGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)

Type II secretion system (T2SS), protein F (T2SSF)

(281-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.13

97.08

0.506
  pilC Legionella pneumophila strain ERS1305867

51.621

97.567

0.504
  pilG Neisseria gonorrhoeae MS11

51.134

96.594

0.494
  pilG Neisseria meningitidis 44/76-A

50.63

96.594

0.489
  pilC Acinetobacter baylyi ADP1

48.995

96.837

0.474
  pilC Acinetobacter baumannii D1279779

49.118

96.594

0.474
  pilC Vibrio cholerae strain A1552

42.172

96.35

0.406
  pilC Vibrio campbellii strain DS40M4

39.655

98.783

0.392
  pilC Thermus thermophilus HB27

37.75

97.324

0.367

Multiple sequence alignment