Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   CDA09_RS17710 Genome accession   NZ_CP021731
Coordinates   3828839..3829690 (+) Length   283 a.a.
NCBI ID   WP_121429857.1    Uniprot ID   -
Organism   Azoarcus sp. DN11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3823839..3834690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDA09_RS17695 (CDA09_17670) ccsA 3824869..3825696 (+) 828 WP_121429854.1 cytochrome c biogenesis protein CcsA -
  CDA09_RS17700 (CDA09_17675) pilB 3825810..3827531 (+) 1722 WP_121429855.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CDA09_RS17705 (CDA09_17680) pilC 3827548..3828783 (+) 1236 WP_121429856.1 type II secretion system F family protein Machinery gene
  CDA09_RS17710 (CDA09_17685) pilD 3828839..3829690 (+) 852 WP_121429857.1 A24 family peptidase Machinery gene
  CDA09_RS17715 (CDA09_17690) - 3829814..3830077 (+) 264 WP_121429858.1 zinc ribbon domain-containing protein -
  CDA09_RS17720 (CDA09_17695) - 3830093..3830719 (+) 627 WP_121429859.1 DUF502 domain-containing protein -
  CDA09_RS17725 (CDA09_17700) aspS 3830763..3832562 (+) 1800 WP_121429860.1 aspartate--tRNA ligase -
  CDA09_RS17730 (CDA09_17705) - 3832741..3834363 (+) 1623 WP_121429861.1 tetratricopeptide repeat-containing response regulator -

Sequence

Protein


Download         Length: 283 a.a.        Molecular weight: 30757.31 Da        Isoelectric Point: 8.1476

>NTDB_id=232924 CDA09_RS17710 WP_121429857.1 3828839..3829690(+) (pilD) [Azoarcus sp. DN11]
MPEFLRDPVAFTFLATLLGLFVGSFLNVVIHRLPRMMEREWHAQAAELRNEPPPEQETFNLATPRSRCPHCGHLITALEN
IPVVSYLMLRGRCRHCGAPISRRYPVVETLSAVLSGYAAWHFGAGLAAVGAMAFLWTMIALAFIDLDTQLLPDSLTLPLL
WLGLALNLGGTYTDIATGVIGAMAGYLSLWSVYWLFKLATGKEGMGYGDFKLLAAIGAWLGWQMLPLTILFSSLVGAVAG
IGLIVFARHGRSVPIPFGPYLAGAGVLALFWGKSLTGMYLGSF

Nucleotide


Download         Length: 852 bp        

>NTDB_id=232924 CDA09_RS17710 WP_121429857.1 3828839..3829690(+) (pilD) [Azoarcus sp. DN11]
ATGCCCGAATTTCTTCGCGACCCGGTCGCATTCACGTTCCTCGCAACGCTTCTCGGCCTCTTCGTCGGCAGTTTCCTGAA
CGTCGTGATTCATCGCCTGCCCCGAATGATGGAGCGCGAATGGCACGCGCAAGCCGCGGAACTGCGTAATGAACCGCCTC
CCGAGCAGGAGACGTTCAACCTCGCAACGCCGCGGTCACGCTGCCCACACTGCGGGCATCTGATCACCGCACTCGAGAAC
ATCCCGGTCGTCAGCTACCTGATGCTGCGCGGACGCTGCCGCCACTGCGGCGCGCCGATCAGCCGCCGTTACCCCGTGGT
CGAAACGCTGTCCGCAGTGTTGTCGGGCTACGCCGCCTGGCACTTCGGGGCCGGCCTTGCGGCAGTCGGCGCGATGGCCT
TCCTCTGGACGATGATCGCGCTCGCCTTCATCGATCTCGACACGCAGTTGCTCCCCGACAGCCTCACCCTGCCGCTGCTG
TGGCTGGGCCTCGCGCTGAACCTGGGCGGCACCTACACGGATATCGCGACGGGCGTGATCGGCGCAATGGCAGGCTACCT
TTCCTTGTGGTCGGTGTATTGGCTGTTCAAGCTGGCTACCGGCAAGGAAGGCATGGGCTACGGCGATTTCAAGCTGCTTG
CCGCCATCGGCGCCTGGCTGGGTTGGCAGATGCTGCCCTTGACGATCCTGTTTTCATCGCTGGTCGGAGCGGTGGCCGGC
ATCGGGCTCATCGTGTTCGCCCGCCACGGCCGGAGCGTCCCGATCCCCTTCGGCCCCTACCTCGCCGGGGCGGGCGTCCT
GGCGCTGTTCTGGGGAAAGAGCCTCACGGGTATGTATCTCGGCAGTTTCTAG

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-122)

Type IV leader peptidase family (Peptidase_A24)

(132-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

55.401

100

0.562
  pilD Vibrio campbellii strain DS40M4

54.007

100

0.548
  pilD Acinetobacter nosocomialis M2

47.5

98.94

0.47
  pilD Acinetobacter baumannii D1279779

47.5

98.94

0.47
  pilD Neisseria gonorrhoeae MS11

51.575

89.753

0.463

Multiple sequence alignment