Detailed information NTG0232249

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: CCX87_RS05775
• Genome accession: NZ_CP021648
• Coordinates: 1200249..1201382 (-)
• Length: 377 a.a.
• NCBI ID: WP_143218432.1
• Uniprot ID: -
• Organism: Acidovorax sp. T1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1195249..1206382

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CCX87_RS05755	-	1196844..1197272 (+)	429	WP_087744515.1	Hsp20/alpha crystallin family protein	-
CCX87_RS05760	-	1197300..1197953 (-)	654	WP_087744517.1	ABC transporter ATP-binding protein	-
CCX87_RS05765	miaA	1197950..1198942 (-)	993	WP_087744519.1	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	-
CCX87_RS05770	-	1198939..1200174 (-)	1236	WP_232476492.1	multidrug effflux MFS transporter	-
CCX87_RS05775	pilU	1200249..1201382 (-)	1134	WP_143218432.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
CCX87_RS05780	gdhA	1201503..1202846 (-)	1344	WP_087744523.1	NADP-specific glutamate dehydrogenase	-
CCX87_RS05785	-	1203030..1203221 (+)	192	Protein_1152	glycerophosphodiester phosphodiesterase family protein	-
CCX87_RS05790	mutL	1203289..1205361 (-)	2073	WP_087744525.1	DNA mismatch repair endonuclease MutL	-
CCX87_RS05795	-	1205461..1206108 (+)	648	WP_087744527.1	DedA family protein	-

Sequence

Protein

• Length: 377 a.a.
• Molecular weight: 41438.68 Da
• Isoelectric Point: 6.2872

>NTDB_id=232249 CCX87_RS05775 WP_143218432.1 1200249..1201382(-) (pilU) [Acidovorax sp. T1]
MEIFSFLNAMVEKGGSDLFFSVGAPVNLKIEGVTHPLKMPALHPGQVKQLAYSVMNEKQISEFEARMEMNLSISAENLGR
FRVNVFVQRGETGMVIRYIKNKIPPLAALGLPPILEKLVLRKRGLVLVTGATGSGKSTTLASMINYRNENVTGHILTIED
PLEFLHAHKRSVVDQREVGIDTLSYEEALKNALREAPDVIMIGEIRDRNTMKQAIAYAETGHLCLSTLHANNANQAMERV
INFFPEDAHHQLLIDLSLNLAGVVSQRLIPGLHEKLVPAVEVMLNSPYISDLIAKGEFSGIKETMGRSTEIGMCTFDQAL
YALYTDGRISLEEALHNADSRTDLALRVRLAAGVNTSDAGELSIDTSTPFQSASRLS

Nucleotide

• Length: 1134 bp

>NTDB_id=232249 CCX87_RS05775 WP_143218432.1 1200249..1201382(-) (pilU) [Acidovorax sp. T1]
GTGGAAATATTCAGCTTTCTGAACGCCATGGTCGAAAAGGGCGGTTCCGACCTGTTCTTCAGCGTGGGTGCGCCCGTCAA
CCTCAAGATTGAGGGCGTCACGCATCCGCTGAAAATGCCTGCGCTGCACCCCGGGCAGGTCAAGCAGCTGGCCTATTCGG
TCATGAACGAAAAGCAGATCAGCGAGTTCGAGGCCAGGATGGAGATGAACCTCTCCATCTCGGCCGAAAACCTGGGGCGC
TTTCGGGTGAATGTGTTTGTGCAGCGTGGCGAAACCGGCATGGTGATTCGCTACATCAAGAACAAGATTCCGCCGCTGGC
CGCGCTGGGCCTGCCGCCGATCCTTGAAAAACTCGTGCTGCGCAAGCGCGGGCTGGTGCTGGTGACCGGGGCCACCGGTT
CGGGCAAGTCCACCACACTGGCCTCGATGATCAACTACCGCAATGAAAACGTGACGGGGCACATTCTCACCATCGAAGAC
CCGCTGGAGTTTCTGCATGCCCACAAGCGTTCGGTGGTGGACCAGCGCGAAGTCGGCATCGACACCCTGTCGTACGAAGA
GGCGCTCAAGAATGCGCTGCGCGAGGCGCCCGACGTGATCATGATCGGCGAGATCCGCGACCGCAACACCATGAAGCAGG
CCATTGCCTATGCGGAAACCGGCCACCTGTGCCTGTCCACGCTGCACGCCAACAATGCCAACCAGGCGATGGAACGCGTC
ATCAACTTCTTCCCCGAAGACGCCCACCACCAGCTGCTCATCGACCTGAGCCTGAACCTGGCGGGCGTGGTGTCGCAGCG
GCTCATTCCGGGGCTGCACGAAAAGCTGGTGCCCGCGGTCGAGGTGATGCTCAACTCGCCCTACATCTCCGACCTGATTG
CCAAGGGCGAGTTCTCGGGCATCAAGGAGACCATGGGGCGCAGCACCGAAATCGGCATGTGCACCTTCGACCAGGCGCTG
TATGCGCTCTACACGGATGGACGGATTTCGCTGGAAGAGGCCCTGCACAATGCCGATTCGCGCACCGACCTGGCGCTGCG
GGTGCGGCTGGCTGCTGGCGTAAACACATCGGACGCGGGGGAGTTGTCCATCGACACGTCCACACCCTTCCAGTCGGCGT
CGCGCCTGTCCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (12-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	54.958	93.634	0.515
pilU	Acinetobacter baylyi ADP1	51.261	94.695	0.485
pilU	Vibrio cholerae strain A1552	51.695	93.899	0.485
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	41.888	89.92	0.377
pilT	Acinetobacter baumannii D1279779	41.317	88.594	0.366
pilT	Acinetobacter nosocomialis M2	41.317	88.594	0.366
pilT	Acinetobacter baumannii strain A118	41.317	88.594	0.366
pilT	Acinetobacter baylyi ADP1	41.317	88.594	0.366
pilT	Pseudomonas aeruginosa PAK	40.828	89.655	0.366
pilT	Pseudomonas stutzeri DSM 10701	40.533	89.655	0.363