Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CCX87_RS03935 Genome accession   NZ_CP021648
Coordinates   820520..821740 (-) Length   406 a.a.
NCBI ID   WP_087743915.1    Uniprot ID   -
Organism   Acidovorax sp. T1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 815520..826740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX87_RS03905 - 816591..817463 (+) 873 WP_087743905.1 ATP-binding protein -
  CCX87_RS03910 - 817441..817875 (+) 435 WP_087743906.1 NUDIX domain-containing protein -
  CCX87_RS03915 - 817966..818184 (-) 219 WP_087743907.1 DNA gyrase inhibitor YacG -
  CCX87_RS03920 zapD 818198..818953 (-) 756 WP_087743909.1 cell division protein ZapD -
  CCX87_RS03925 coaE 819037..819645 (-) 609 WP_198314761.1 dephospho-CoA kinase -
  CCX87_RS03930 - 819648..820520 (-) 873 WP_087743913.1 A24 family peptidase -
  CCX87_RS03935 pilC 820520..821740 (-) 1221 WP_087743915.1 type II secretion system F family protein Machinery gene
  CCX87_RS03940 pilB 821761..823497 (-) 1737 WP_087743918.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CCX87_RS03950 - 823745..824674 (-) 930 WP_198314762.1 polyprenyl synthetase family protein -
  CCX87_RS03955 rplU 824905..825216 (+) 312 WP_024814187.1 50S ribosomal protein L21 -
  CCX87_RS03960 rpmA 825232..825489 (+) 258 WP_087743920.1 50S ribosomal protein L27 -
  CCX87_RS03965 obgE 825657..826727 (+) 1071 WP_087743922.1 GTPase ObgE -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44668.63 Da        Isoelectric Point: 9.5390

>NTDB_id=232246 CCX87_RS03935 WP_087743915.1 820520..821740(-) (pilC) [Acidovorax sp. T1]
MATAASKRDIKDFVFEWEGKDRNGKIVRGETRAGGDNQVQAMLRRQGVFPTKIKKRRMRSGKKIKPKDIALFTRQLATMM
KAGVPLLQAFDIVGRGNTNASVTKLLNDVRSDVETGTSLNGAFRKYPMYFDSLYCNLVEAGEAAGILEALLDRLALYMEK
TEAIKSKIKSALMYPISVVIVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLFVMAISEIFVKWWWLIFGVLGGGFYFF
MQAWRRSEKVQMFMDRLMLRMPIFGALVEKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNSVYSMATDKIQQEVSTG
TSLTAAMGNANIFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDDMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIF
KLGQVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=232246 CCX87_RS03935 WP_087743915.1 820520..821740(-) (pilC) [Acidovorax sp. T1]
ATGGCAACCGCAGCATCCAAACGCGACATCAAGGACTTCGTCTTTGAGTGGGAAGGCAAAGACCGCAACGGAAAGATTGT
CAGGGGGGAAACTCGTGCCGGAGGGGACAATCAGGTACAGGCCATGTTGCGGCGCCAAGGGGTTTTCCCCACCAAGATCA
AGAAGCGCCGCATGCGCTCTGGCAAGAAGATCAAACCCAAAGATATTGCCTTGTTCACCCGCCAACTGGCTACCATGATG
AAGGCTGGGGTGCCATTGCTACAGGCGTTCGATATTGTGGGACGCGGCAACACCAATGCCAGCGTGACCAAATTGCTGAA
CGATGTGCGCTCGGATGTTGAAACCGGCACCTCATTGAATGGCGCATTTCGCAAATACCCCATGTATTTCGACAGCTTGT
ATTGCAACCTGGTCGAGGCAGGGGAGGCTGCAGGTATTCTGGAAGCGCTTCTCGATCGCCTGGCGCTTTACATGGAAAAG
ACCGAGGCCATCAAGTCCAAGATCAAGTCGGCACTCATGTACCCGATTTCGGTGGTGATCGTGGCGTTTGTGGTGGTCAC
CGTGATCATGATTTTTGTGATTCCGGCCTTCAAGGAAGTCTTCACCTCGTTTGGTGCAGATTTGCCCGCCCCCACCCTTT
TCGTCATGGCCATCAGCGAAATATTCGTGAAGTGGTGGTGGTTGATTTTCGGCGTGCTGGGTGGCGGGTTTTACTTCTTC
ATGCAGGCGTGGCGCCGCAGTGAAAAAGTCCAGATGTTCATGGACCGCCTGATGCTGCGCATGCCCATTTTTGGCGCGCT
GGTGGAAAAATCCTGCGTCGCCCGCTGGACCCGGACGCTTTCGACAATGTTTGCTGCAGGCGTGCCCTTGGTGGAGGCAC
TGGACTCCGTAGGGGGCGCCTCAGGGAATTCGGTCTATTCCATGGCGACCGACAAGATTCAGCAAGAGGTTTCTACGGGA
ACCAGCCTGACTGCGGCAATGGGCAATGCCAATATCTTCCCTTCCATGGTGCTGCAGATGTGCGCCATTGGGGAGGAGTC
AGGTTCCATCGACCACATGCTGGGCAAGGCGGCCGACTTCTATGAAGCGGAAGTGGACGACATGGTGGCCGGGCTCTCCA
GCCTGATGGAACCCATCATCATCGTGTTTTTGGGCACCCTGATTGGTGGCATCGTGGTGTCGATGTACCTGCCGATTTTC
AAGCTCGGTCAGGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.208

99.507

0.539
  pilG Neisseria gonorrhoeae MS11

52.02

97.537

0.507
  pilG Neisseria meningitidis 44/76-A

51.768

97.537

0.505
  pilC Acinetobacter baylyi ADP1

50

98.03

0.49
  pilC Legionella pneumophila strain ERS1305867

49.497

98.03

0.485
  pilC Acinetobacter baumannii D1279779

47.859

97.783

0.468
  pilC Vibrio cholerae strain A1552

40.302

97.783

0.394
  pilC Vibrio campbellii strain DS40M4

39

98.522

0.384
  pilC Thermus thermophilus HB27

37.343

98.276

0.367

Multiple sequence alignment