Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CCX85_RS00735 Genome accession   NZ_CP021640
Coordinates   112371..112766 (+) Length   131 a.a.
NCBI ID   WP_101248263.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain JS12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 107371..117766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX85_RS00700 (CCX85_00700) - 108237..108545 (+) 309 WP_010921804.1 hypothetical protein -
  CCX85_RS00705 (CCX85_00705) proC 108628..109398 (-) 771 WP_101248262.1 pyrroline-5-carboxylate reductase -
  CCX85_RS00710 (CCX85_00710) pepA 109446..110513 (-) 1068 WP_012560390.1 glutamyl aminopeptidase -
  CCX85_RS00720 (CCX85_00720) - 110978..111262 (+) 285 WP_002992749.1 DUF4651 domain-containing protein -
  CCX85_RS00725 (CCX85_00725) - 111259..111576 (+) 318 WP_002992751.1 thioredoxin family protein -
  CCX85_RS00730 (CCX85_00730) ytpR 111594..112238 (+) 645 WP_002992754.1 YtpR family tRNA-binding protein -
  CCX85_RS00735 (CCX85_00735) ssbA 112371..112766 (+) 396 WP_101248263.1 single-stranded DNA-binding protein Machinery gene
  CCX85_RS00740 (CCX85_00740) - 113026..113667 (-) 642 WP_023610076.1 deoxynucleoside kinase -
  CCX85_RS00745 (CCX85_00745) dusB 113687..114664 (-) 978 WP_021775420.1 tRNA dihydrouridine synthase DusB -
  CCX85_RS00750 (CCX85_00750) hslO 114651..115523 (-) 873 WP_023610084.1 Hsp33 family molecular chaperone HslO -
  CCX85_RS00755 (CCX85_00755) nra 115649..117184 (-) 1536 WP_038432740.1 transcriptional regulator Nra -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14847.99 Da        Isoelectric Point: 8.4053

>NTDB_id=232088 CCX85_RS00735 WP_101248263.1 112371..112766(+) (ssbA) [Streptococcus pyogenes strain JS12]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLYQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=232088 CCX85_RS00735 WP_101248263.1 112371..112766(+) (ssbA) [Streptococcus pyogenes strain JS12]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCTGATTTTATTTCAGTTGTTGTTT
GGGGAAAGTTAGCAGAAACTCTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTACCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
GCGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397

Multiple sequence alignment