Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OLMES_RS09470 Genome accession   NZ_CP021425
Coordinates   2160458..2161678 (-) Length   406 a.a.
NCBI ID   WP_087461041.1    Uniprot ID   A0A1Y0I6E8
Organism   Oleiphilus messinensis strain ME102     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2155458..2166678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OLMES_RS09435 (OLMES_1920) - 2155685..2156869 (-) 1185 WP_087461034.1 hypothetical protein -
  OLMES_RS09440 (OLMES_1921) - 2156886..2157623 (-) 738 WP_087461035.1 LrgB family protein -
  OLMES_RS09445 (OLMES_1922) - 2157628..2158005 (-) 378 WP_087461036.1 CidA/LrgA family protein -
  OLMES_RS09450 (OLMES_1923) - 2158002..2158490 (-) 489 WP_087461037.1 HIT family protein -
  OLMES_RS09455 (OLMES_1924) - 2158517..2158741 (-) 225 WP_087461038.1 DNA gyrase inhibitor YacG -
  OLMES_RS09460 (OLMES_1925) coaE 2158810..2159436 (-) 627 WP_087461039.1 dephospho-CoA kinase -
  OLMES_RS09465 (OLMES_1926) pilD 2159512..2160381 (-) 870 WP_087461040.1 A24 family peptidase Machinery gene
  OLMES_RS09470 (OLMES_1927) pilC 2160458..2161678 (-) 1221 WP_087461041.1 type II secretion system F family protein Machinery gene
  OLMES_RS09475 (OLMES_1928) pilB 2161681..2163390 (-) 1710 WP_198343281.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OLMES_RS09480 (OLMES_1929) - 2163746..2164192 (+) 447 WP_087461043.1 pilin -
  OLMES_RS09485 (OLMES_1930) - 2164280..2166136 (+) 1857 WP_087461044.1 hypothetical protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44164.75 Da        Isoelectric Point: 7.1715

>NTDB_id=230584 OLMES_RS09470 WP_087461041.1 2160458..2161678(-) (pilC) [Oleiphilus messinensis strain ME102]
MAEKANSYDVYIWQGTDKRGHKAQGELSGPNAALVKAQLRKQGVTPKSVKKKPKPLFGGGSKKITPFDIAIFTRQMATMM
KAGVPLVQSFEIVADGLENPSLRELVLTIREDVSAGNDFASALRKHPKYFDDLFCNLVDAGEKSGALETMLDRVATYLEK
TETLKKKVKKAMTYPIAVLVVAVVVTGILLVKVVPQFEELFSGFGADLPAFTQFVIGISEWLQEWWFVVLLIIIGVIGGF
REAKRKSPSFSDKVDAYMLKFPIIGTILDKSAVARFARVLSTTFAAGVPLVDALESVAGATGNAVFRDAVNKIKVEVSSG
TQLQFSMKATGVFPVMAIQMVSIGEESGALDSMLEKVADYYEEEVDNLVDNLTTLMEPMIMAVLGVLVGGLIVAMYLPIF
QMGQAV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=230584 OLMES_RS09470 WP_087461041.1 2160458..2161678(-) (pilC) [Oleiphilus messinensis strain ME102]
ATGGCAGAAAAAGCAAATTCATACGATGTCTACATCTGGCAAGGCACTGATAAGAGAGGGCACAAAGCCCAAGGTGAATT
GAGTGGCCCCAATGCTGCGCTGGTAAAAGCCCAGTTGCGCAAACAGGGCGTGACACCAAAGTCTGTAAAAAAGAAACCAA
AGCCTCTGTTTGGTGGCGGTAGCAAGAAAATAACACCATTTGATATTGCCATTTTCACCCGTCAAATGGCAACAATGATG
AAAGCTGGGGTTCCGTTGGTGCAATCATTCGAAATCGTCGCCGATGGCCTCGAGAACCCATCCTTACGTGAATTGGTATT
AACCATTCGTGAAGACGTGTCAGCCGGTAACGATTTCGCTAGCGCGCTTCGTAAACACCCCAAGTATTTCGATGACCTGT
TCTGCAACCTTGTTGATGCAGGTGAAAAATCAGGTGCGCTGGAAACCATGCTCGATAGGGTCGCGACCTATTTGGAAAAA
ACTGAAACCCTCAAAAAGAAGGTTAAAAAGGCGATGACCTACCCAATCGCGGTTCTGGTCGTTGCAGTCGTTGTAACCGG
GATACTCCTCGTCAAAGTGGTACCGCAGTTTGAGGAACTATTCTCAGGGTTTGGCGCCGATTTGCCGGCTTTCACTCAAT
TTGTAATCGGCATATCCGAATGGCTTCAAGAGTGGTGGTTTGTCGTTCTGCTTATCATTATTGGCGTGATTGGAGGATTC
AGGGAGGCTAAGCGCAAATCCCCCTCATTCTCGGATAAAGTTGATGCTTATATGTTGAAATTCCCGATCATTGGAACGAT
CCTCGATAAATCGGCCGTAGCGCGCTTTGCTCGAGTGCTGTCTACCACTTTCGCAGCCGGTGTACCGCTCGTTGATGCTC
TGGAATCTGTTGCTGGGGCAACGGGCAACGCTGTATTTAGAGATGCTGTCAACAAAATAAAAGTCGAAGTTTCATCTGGC
ACACAACTCCAATTTTCAATGAAGGCGACTGGTGTTTTCCCCGTAATGGCCATTCAAATGGTCTCAATTGGTGAGGAATC
AGGTGCATTGGACAGCATGCTTGAGAAAGTGGCCGATTATTATGAAGAAGAGGTCGACAATCTGGTGGATAACCTGACCA
CCCTCATGGAACCGATGATTATGGCCGTGCTGGGTGTACTGGTGGGAGGCCTTATCGTTGCCATGTACCTGCCAATCTTC
CAGATGGGTCAAGCTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0I6E8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

67.241

100

0.672
  pilC Acinetobacter baumannii D1279779

61.235

99.754

0.611
  pilC Acinetobacter baylyi ADP1

59.36

100

0.594
  pilC Legionella pneumophila strain ERS1305867

57.576

97.537

0.562
  pilG Neisseria gonorrhoeae MS11

43.577

97.783

0.426
  pilG Neisseria meningitidis 44/76-A

43.325

97.783

0.424
  pilC Vibrio cholerae strain A1552

41.327

96.552

0.399
  pilC Vibrio campbellii strain DS40M4

39.541

96.552

0.382
  pilC Thermus thermophilus HB27

37.871

99.507

0.377

Multiple sequence alignment