Detailed information NTG0230583

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OLMES_RS09465
• Genome accession: NZ_CP021425
• Coordinates: 2159512..2160381 (-)
• Length: 289 a.a.
• NCBI ID: WP_087461040.1
• Uniprot ID: A0A1Y0I705
• Organism: Oleiphilus messinensis strain ME102
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2154512..2165381

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OLMES_RS09425 (OLMES_1918)	-	2154677..2154955 (-)	279	WP_087464413.1	YkgJ family cysteine cluster protein	-
OLMES_RS09430 (OLMES_1919)	tsaA	2154964..2155683 (-)	720	WP_087461033.1	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	-
OLMES_RS09435 (OLMES_1920)	-	2155685..2156869 (-)	1185	WP_087461034.1	hypothetical protein	-
OLMES_RS09440 (OLMES_1921)	-	2156886..2157623 (-)	738	WP_087461035.1	LrgB family protein	-
OLMES_RS09445 (OLMES_1922)	-	2157628..2158005 (-)	378	WP_087461036.1	CidA/LrgA family protein	-
OLMES_RS09450 (OLMES_1923)	-	2158002..2158490 (-)	489	WP_087461037.1	HIT family protein	-
OLMES_RS09455 (OLMES_1924)	-	2158517..2158741 (-)	225	WP_087461038.1	DNA gyrase inhibitor YacG	-
OLMES_RS09460 (OLMES_1925)	coaE	2158810..2159436 (-)	627	WP_087461039.1	dephospho-CoA kinase	-
OLMES_RS09465 (OLMES_1926)	pilD	2159512..2160381 (-)	870	WP_087461040.1	A24 family peptidase	Machinery gene
OLMES_RS09470 (OLMES_1927)	pilC	2160458..2161678 (-)	1221	WP_087461041.1	type II secretion system F family protein	Machinery gene
OLMES_RS09475 (OLMES_1928)	pilB	2161681..2163390 (-)	1710	WP_198343281.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OLMES_RS09480 (OLMES_1929)	-	2163746..2164192 (+)	447	WP_087461043.1	pilin	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32099.29 Da
• Isoelectric Point: 6.8609

>NTDB_id=230583 OLMES_RS09465 WP_087461040.1 2159512..2160381(-) (pilD) [Oleiphilus messinensis strain ME102]
MQIILNYLTENAIFTYFFITLLGLIIGSFLNVVIYRIPKILENEWKCQCRDILELEPEATQPFTLSKPDSTCPKCGHKIR
AWENVPILSYLFLKGRCSSCSNKISIRYPLVELATGLLSLATVYVLGINTAGLAALILTWYLIALTMIDVDTQLLPDNMT
LPLLWLGLILNMFNTFTSLESAVLGAVFGYLSLWSVYQLFKLITGKEGMGFGDFKLLAALGAWMGWQFLPLIIILSSFVG
AVIGISQIVLRGQDKNIPIPFGPYLAIAGWIALLWGNSLIALYLGTMTP

Nucleotide

• Length: 870 bp

>NTDB_id=230583 OLMES_RS09465 WP_087461040.1 2159512..2160381(-) (pilD) [Oleiphilus messinensis strain ME102]
ATGCAAATTATTCTAAATTACCTTACTGAAAATGCCATTTTCACTTATTTTTTTATCACATTACTCGGCCTAATCATCGG
CAGCTTCCTGAACGTCGTAATCTACCGTATCCCTAAAATACTGGAGAACGAATGGAAATGCCAATGCCGCGACATTCTGG
AGCTTGAACCCGAAGCCACTCAGCCCTTCACATTATCAAAACCCGATTCGACTTGCCCCAAATGCGGCCATAAGATTCGC
GCTTGGGAAAATGTTCCCATATTGAGCTATCTGTTTCTCAAAGGCCGCTGCAGTAGTTGCAGCAACAAAATATCGATTCG
GTATCCATTGGTTGAGCTCGCAACCGGTTTGTTAAGCCTCGCCACGGTCTATGTTTTGGGCATTAATACTGCCGGTCTGG
CGGCATTGATATTGACCTGGTATCTGATTGCCTTGACCATGATTGATGTCGATACCCAACTCCTGCCAGACAATATGACG
CTGCCGCTGCTTTGGCTCGGGTTGATACTGAATATGTTTAATACCTTTACCTCATTGGAATCCGCGGTGTTAGGTGCTGT
TTTCGGATATCTGTCACTCTGGTCCGTGTATCAACTGTTTAAATTGATTACCGGAAAAGAAGGTATGGGTTTTGGTGATT
TCAAACTGCTGGCGGCATTAGGTGCCTGGATGGGATGGCAATTTTTGCCACTTATCATTATCCTTTCGTCCTTTGTTGGA
GCAGTGATCGGCATTTCGCAAATCGTTTTGCGGGGACAAGACAAAAATATCCCGATACCTTTCGGGCCTTATCTTGCGAT
TGCCGGGTGGATTGCCTTGCTATGGGGTAATTCGCTCATCGCGTTATACCTGGGAACGATGACACCCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-124)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

3D structure

• AlphaFold DB: A0A1Y0I705

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	54.355	99.308	0.54
pilD	Acinetobacter baumannii D1279779	54.355	99.308	0.54
pilD	Vibrio cholerae strain A1552	54.982	93.772	0.516
pilD	Vibrio campbellii strain DS40M4	49.474	98.616	0.488
pilD	Neisseria gonorrhoeae MS11	52.692	89.965	0.474