Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | CBP36_RS13800 | Genome accession | NZ_CP021366 |
| Coordinates | 2980212..2981345 (+) | Length | 377 a.a. |
| NCBI ID | WP_086912955.1 | Uniprot ID | A0A240UFA5 |
| Organism | Acidovorax carolinensis strain P4 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2975212..2986345
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CBP36_RS13785 (CBP36_13775) | - | 2975845..2977284 (+) | 1440 | WP_157896755.1 | sensor histidine kinase | - |
| CBP36_RS13790 (CBP36_13780) | - | 2977343..2978515 (-) | 1173 | WP_086927818.1 | glycerophosphodiester phosphodiesterase | - |
| CBP36_RS13795 (CBP36_13785) | gdhA | 2978748..2980091 (+) | 1344 | WP_086927819.1 | NADP-specific glutamate dehydrogenase | - |
| CBP36_RS13800 (CBP36_13790) | pilU | 2980212..2981345 (+) | 1134 | WP_086912955.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| CBP36_RS13805 (CBP36_13795) | - | 2981420..2982655 (+) | 1236 | WP_086927820.1 | multidrug effflux MFS transporter | - |
| CBP36_RS13810 (CBP36_13800) | miaA | 2982652..2983644 (+) | 993 | WP_086927821.1 | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA | - |
| CBP36_RS13815 (CBP36_13805) | - | 2983641..2984294 (+) | 654 | WP_086927822.1 | ABC transporter ATP-binding protein | - |
| CBP36_RS13820 (CBP36_13810) | - | 2984322..2984750 (-) | 429 | WP_086912959.1 | Hsp20/alpha crystallin family protein | - |
Sequence
Protein
Download Length: 377 a.a. Molecular weight: 41304.66 Da Isoelectric Point: 6.3486
>NTDB_id=230211 CBP36_RS13800 WP_086912955.1 2980212..2981345(+) (pilU) [Acidovorax carolinensis strain P4]
MEIFSFLNAMVEKGGSDLFFSVGAPVNLKIEGVTHPLKMPALHPGQVKQLAYSVMNEKQISEFEAKMEMNLSISAENLGR
FRVNVFVQRGETGMVIRYIKSKIPPLAALGLPPILEKLVLRKRGLVLVTGATGSGKSTTLASMINYRNENVTGHILTIED
PLEFLHAHKRSVVDQREVGIDTLSYEEALKNALREAPDVIMIGEIRDRNTMKQAIAYAETGHLCLSTLHANNANQAMERV
INFFPEDAHRQLLIDLSLNLAGVVSQRLIPGLHEKLVPAVEVLLNSPYIADLIAKGEFAGIKETMGRSTEIGMCTFDQAL
YALYTEGRIALEEALHNADSRTDLALRVRLAAGVNASDAGELSIDTATPFQSASRLS
MEIFSFLNAMVEKGGSDLFFSVGAPVNLKIEGVTHPLKMPALHPGQVKQLAYSVMNEKQISEFEAKMEMNLSISAENLGR
FRVNVFVQRGETGMVIRYIKSKIPPLAALGLPPILEKLVLRKRGLVLVTGATGSGKSTTLASMINYRNENVTGHILTIED
PLEFLHAHKRSVVDQREVGIDTLSYEEALKNALREAPDVIMIGEIRDRNTMKQAIAYAETGHLCLSTLHANNANQAMERV
INFFPEDAHRQLLIDLSLNLAGVVSQRLIPGLHEKLVPAVEVLLNSPYIADLIAKGEFAGIKETMGRSTEIGMCTFDQAL
YALYTEGRIALEEALHNADSRTDLALRVRLAAGVNASDAGELSIDTATPFQSASRLS
Nucleotide
Download Length: 1134 bp
>NTDB_id=230211 CBP36_RS13800 WP_086912955.1 2980212..2981345(+) (pilU) [Acidovorax carolinensis strain P4]
GTGGAAATATTCAGCTTTCTGAACGCCATGGTCGAAAAGGGCGGCTCCGACCTGTTCTTCAGCGTAGGCGCGCCCGTCAA
CCTCAAGATTGAAGGCGTCACGCATCCGTTGAAAATGCCTGCGCTGCACCCCGGGCAGGTCAAGCAGCTGGCCTATTCGG
TCATGAACGAAAAGCAGATCAGCGAGTTCGAGGCGAAGATGGAGATGAACCTGTCCATCTCGGCCGAAAACCTGGGGCGC
TTTCGGGTGAATGTGTTCGTGCAGCGCGGCGAAACCGGGATGGTGATTCGCTACATCAAGAGCAAGATTCCGCCGCTGGC
CGCGCTGGGCCTGCCGCCGATCCTTGAAAAACTCGTGCTGCGCAAGCGCGGCCTGGTGCTGGTGACCGGGGCCACCGGTT
CGGGCAAGTCCACCACGCTGGCCTCGATGATCAACTACCGCAATGAAAACGTGACGGGGCACATTCTCACCATCGAGGAT
CCGCTGGAGTTTTTGCATGCCCACAAGCGCTCGGTGGTGGACCAGCGCGAGGTCGGCATCGACACCCTGTCATACGAAGA
GGCGCTCAAGAACGCGCTGCGCGAGGCACCCGACGTGATCATGATTGGCGAGATCCGCGACCGCAACACCATGAAGCAGG
CCATTGCCTATGCGGAAACCGGCCACCTGTGTCTGTCCACGCTGCACGCCAACAATGCCAACCAGGCAATGGAACGCGTC
ATCAACTTCTTCCCTGAAGACGCCCACCGCCAGCTGCTCATCGACCTGAGCCTGAATCTGGCAGGCGTAGTGTCGCAGCG
GCTGATTCCGGGTTTGCACGAAAAGCTGGTGCCGGCGGTCGAGGTGCTGCTCAACTCGCCCTACATCGCCGACCTGATCG
CCAAAGGCGAGTTCGCCGGCATCAAGGAGACCATGGGGCGCAGCACCGAAATCGGCATGTGCACCTTCGACCAGGCGCTG
TATGCGCTCTACACCGAGGGCCGGATCGCACTCGAAGAGGCCCTGCACAATGCCGATTCGCGCACCGACCTGGCCCTGCG
CGTGCGGCTGGCCGCCGGCGTGAACGCGTCGGACGCAGGGGAGCTGTCCATCGACACGGCTACGCCCTTCCAGTCGGCGT
CGCGCCTGTCCTGA
GTGGAAATATTCAGCTTTCTGAACGCCATGGTCGAAAAGGGCGGCTCCGACCTGTTCTTCAGCGTAGGCGCGCCCGTCAA
CCTCAAGATTGAAGGCGTCACGCATCCGTTGAAAATGCCTGCGCTGCACCCCGGGCAGGTCAAGCAGCTGGCCTATTCGG
TCATGAACGAAAAGCAGATCAGCGAGTTCGAGGCGAAGATGGAGATGAACCTGTCCATCTCGGCCGAAAACCTGGGGCGC
TTTCGGGTGAATGTGTTCGTGCAGCGCGGCGAAACCGGGATGGTGATTCGCTACATCAAGAGCAAGATTCCGCCGCTGGC
CGCGCTGGGCCTGCCGCCGATCCTTGAAAAACTCGTGCTGCGCAAGCGCGGCCTGGTGCTGGTGACCGGGGCCACCGGTT
CGGGCAAGTCCACCACGCTGGCCTCGATGATCAACTACCGCAATGAAAACGTGACGGGGCACATTCTCACCATCGAGGAT
CCGCTGGAGTTTTTGCATGCCCACAAGCGCTCGGTGGTGGACCAGCGCGAGGTCGGCATCGACACCCTGTCATACGAAGA
GGCGCTCAAGAACGCGCTGCGCGAGGCACCCGACGTGATCATGATTGGCGAGATCCGCGACCGCAACACCATGAAGCAGG
CCATTGCCTATGCGGAAACCGGCCACCTGTGTCTGTCCACGCTGCACGCCAACAATGCCAACCAGGCAATGGAACGCGTC
ATCAACTTCTTCCCTGAAGACGCCCACCGCCAGCTGCTCATCGACCTGAGCCTGAATCTGGCAGGCGTAGTGTCGCAGCG
GCTGATTCCGGGTTTGCACGAAAAGCTGGTGCCGGCGGTCGAGGTGCTGCTCAACTCGCCCTACATCGCCGACCTGATCG
CCAAAGGCGAGTTCGCCGGCATCAAGGAGACCATGGGGCGCAGCACCGAAATCGGCATGTGCACCTTCGACCAGGCGCTG
TATGCGCTCTACACCGAGGGCCGGATCGCACTCGAAGAGGCCCTGCACAATGCCGATTCGCGCACCGACCTGGCCCTGCG
CGTGCGGCTGGCCGCCGGCGTGAACGCGTCGGACGCAGGGGAGCTGTCCATCGACACGGCTACGCCCTTCCAGTCGGCGT
CGCGCCTGTCCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
55.524 |
93.634 |
0.52 |
| pilU | Vibrio cholerae strain A1552 |
51.695 |
93.899 |
0.485 |
| pilU | Acinetobacter baylyi ADP1 |
50.98 |
94.695 |
0.483 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
40.945 |
100 |
0.414 |
| pilT | Acinetobacter baylyi ADP1 |
41.916 |
88.594 |
0.371 |
| pilT | Acinetobacter nosocomialis M2 |
41.617 |
88.594 |
0.369 |
| pilT | Acinetobacter baumannii D1279779 |
41.617 |
88.594 |
0.369 |
| pilT | Acinetobacter baumannii strain A118 |
41.617 |
88.594 |
0.369 |
| pilT | Pseudomonas aeruginosa PAK |
40.828 |
89.655 |
0.366 |
| pilT | Pseudomonas stutzeri DSM 10701 |
40.533 |
89.655 |
0.363 |