Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | CBP33_RS13260 | Genome accession | NZ_CP021359 |
| Coordinates | 2839581..2840714 (+) | Length | 377 a.a. |
| NCBI ID | WP_086912955.1 | Uniprot ID | A0A240UFA5 |
| Organism | Acidovorax carolinensis strain NA2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2834581..2845714
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CBP33_RS13245 (CBP33_13235) | mutL | 2834636..2836636 (+) | 2001 | WP_086912952.1 | DNA mismatch repair endonuclease MutL | - |
| CBP33_RS13250 (CBP33_13240) | - | 2836707..2837879 (-) | 1173 | WP_086912953.1 | glycerophosphodiester phosphodiesterase | - |
| CBP33_RS13255 (CBP33_13245) | gdhA | 2838113..2839456 (+) | 1344 | WP_086912954.1 | NADP-specific glutamate dehydrogenase | - |
| CBP33_RS13260 (CBP33_13250) | pilU | 2839581..2840714 (+) | 1134 | WP_086912955.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| CBP33_RS13265 (CBP33_13255) | - | 2840789..2842024 (+) | 1236 | WP_086912956.1 | Bcr/CflA family efflux MFS transporter | - |
| CBP33_RS13270 (CBP33_13260) | miaA | 2842021..2843013 (+) | 993 | WP_086912957.1 | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA | - |
| CBP33_RS13275 (CBP33_13265) | - | 2843010..2843663 (+) | 654 | WP_086912958.1 | ABC transporter ATP-binding protein | - |
| CBP33_RS13280 (CBP33_13270) | - | 2843691..2844119 (-) | 429 | WP_086912959.1 | Hsp20/alpha crystallin family protein | - |
Sequence
Protein
Download Length: 377 a.a. Molecular weight: 41304.66 Da Isoelectric Point: 6.3486
>NTDB_id=230160 CBP33_RS13260 WP_086912955.1 2839581..2840714(+) (pilU) [Acidovorax carolinensis strain NA2]
MEIFSFLNAMVEKGGSDLFFSVGAPVNLKIEGVTHPLKMPALHPGQVKQLAYSVMNEKQISEFEAKMEMNLSISAENLGR
FRVNVFVQRGETGMVIRYIKSKIPPLAALGLPPILEKLVLRKRGLVLVTGATGSGKSTTLASMINYRNENVTGHILTIED
PLEFLHAHKRSVVDQREVGIDTLSYEEALKNALREAPDVIMIGEIRDRNTMKQAIAYAETGHLCLSTLHANNANQAMERV
INFFPEDAHRQLLIDLSLNLAGVVSQRLIPGLHEKLVPAVEVLLNSPYIADLIAKGEFAGIKETMGRSTEIGMCTFDQAL
YALYTEGRIALEEALHNADSRTDLALRVRLAAGVNASDAGELSIDTATPFQSASRLS
MEIFSFLNAMVEKGGSDLFFSVGAPVNLKIEGVTHPLKMPALHPGQVKQLAYSVMNEKQISEFEAKMEMNLSISAENLGR
FRVNVFVQRGETGMVIRYIKSKIPPLAALGLPPILEKLVLRKRGLVLVTGATGSGKSTTLASMINYRNENVTGHILTIED
PLEFLHAHKRSVVDQREVGIDTLSYEEALKNALREAPDVIMIGEIRDRNTMKQAIAYAETGHLCLSTLHANNANQAMERV
INFFPEDAHRQLLIDLSLNLAGVVSQRLIPGLHEKLVPAVEVLLNSPYIADLIAKGEFAGIKETMGRSTEIGMCTFDQAL
YALYTEGRIALEEALHNADSRTDLALRVRLAAGVNASDAGELSIDTATPFQSASRLS
Nucleotide
Download Length: 1134 bp
>NTDB_id=230160 CBP33_RS13260 WP_086912955.1 2839581..2840714(+) (pilU) [Acidovorax carolinensis strain NA2]
GTGGAAATATTCAGCTTTCTGAACGCCATGGTCGAAAAGGGCGGCTCCGACCTGTTCTTCAGCGTGGGCGCGCCCGTCAA
CCTCAAGATTGAAGGCGTCACGCATCCGCTGAAAATGCCTGCGCTGCACCCCGGGCAGGTCAAGCAGCTGGCCTATTCGG
TCATGAACGAAAAGCAGATCAGCGAGTTCGAGGCGAAGATGGAGATGAACTTGTCCATCTCGGCCGAAAACCTGGGGCGC
TTTCGGGTGAATGTGTTCGTGCAGCGCGGCGAAACCGGGATGGTGATTCGCTACATCAAGAGCAAGATTCCGCCGCTGGC
CGCGCTGGGCCTGCCGCCGATCCTTGAAAAACTCGTGCTGCGCAAGCGCGGCCTGGTGCTGGTGACCGGGGCCACCGGTT
CGGGCAAGTCCACCACGCTGGCCTCGATGATCAACTACCGCAATGAAAACGTGACGGGGCACATTCTCACCATCGAGGAC
CCGCTGGAGTTTTTGCATGCCCACAAGCGCTCGGTGGTGGACCAGCGCGAAGTAGGCATCGACACCCTGTCATACGAAGA
GGCGCTCAAGAACGCGCTGCGCGAGGCACCCGACGTGATCATGATTGGCGAAATCCGCGACCGCAACACCATGAAGCAGG
CCATTGCCTATGCGGAAACCGGCCACCTGTGCCTTTCCACGCTGCACGCCAACAATGCCAACCAGGCAATGGAACGCGTC
ATCAACTTCTTCCCTGAAGACGCCCACCGCCAGCTGCTCATCGACCTGAGCCTGAATCTGGCAGGCGTGGTGTCGCAGCG
GCTGATTCCGGGTTTGCACGAAAAGCTGGTGCCGGCGGTCGAGGTGCTGCTCAACTCGCCCTACATCGCCGACCTGATCG
CCAAAGGCGAGTTCGCCGGCATCAAGGAGACCATGGGGCGCAGCACCGAAATCGGCATGTGCACCTTCGACCAGGCGCTG
TATGCGCTCTACACCGAGGGCCGGATCGCACTCGAAGAGGCCCTGCACAATGCCGATTCGCGCACCGACCTGGCCCTGCG
CGTGCGGCTGGCCGCCGGCGTGAACGCGTCGGACGCAGGGGAGCTATCCATCGACACGGCTACGCCCTTCCAGTCGGCGT
CGCGCCTGTCCTGA
GTGGAAATATTCAGCTTTCTGAACGCCATGGTCGAAAAGGGCGGCTCCGACCTGTTCTTCAGCGTGGGCGCGCCCGTCAA
CCTCAAGATTGAAGGCGTCACGCATCCGCTGAAAATGCCTGCGCTGCACCCCGGGCAGGTCAAGCAGCTGGCCTATTCGG
TCATGAACGAAAAGCAGATCAGCGAGTTCGAGGCGAAGATGGAGATGAACTTGTCCATCTCGGCCGAAAACCTGGGGCGC
TTTCGGGTGAATGTGTTCGTGCAGCGCGGCGAAACCGGGATGGTGATTCGCTACATCAAGAGCAAGATTCCGCCGCTGGC
CGCGCTGGGCCTGCCGCCGATCCTTGAAAAACTCGTGCTGCGCAAGCGCGGCCTGGTGCTGGTGACCGGGGCCACCGGTT
CGGGCAAGTCCACCACGCTGGCCTCGATGATCAACTACCGCAATGAAAACGTGACGGGGCACATTCTCACCATCGAGGAC
CCGCTGGAGTTTTTGCATGCCCACAAGCGCTCGGTGGTGGACCAGCGCGAAGTAGGCATCGACACCCTGTCATACGAAGA
GGCGCTCAAGAACGCGCTGCGCGAGGCACCCGACGTGATCATGATTGGCGAAATCCGCGACCGCAACACCATGAAGCAGG
CCATTGCCTATGCGGAAACCGGCCACCTGTGCCTTTCCACGCTGCACGCCAACAATGCCAACCAGGCAATGGAACGCGTC
ATCAACTTCTTCCCTGAAGACGCCCACCGCCAGCTGCTCATCGACCTGAGCCTGAATCTGGCAGGCGTGGTGTCGCAGCG
GCTGATTCCGGGTTTGCACGAAAAGCTGGTGCCGGCGGTCGAGGTGCTGCTCAACTCGCCCTACATCGCCGACCTGATCG
CCAAAGGCGAGTTCGCCGGCATCAAGGAGACCATGGGGCGCAGCACCGAAATCGGCATGTGCACCTTCGACCAGGCGCTG
TATGCGCTCTACACCGAGGGCCGGATCGCACTCGAAGAGGCCCTGCACAATGCCGATTCGCGCACCGACCTGGCCCTGCG
CGTGCGGCTGGCCGCCGGCGTGAACGCGTCGGACGCAGGGGAGCTATCCATCGACACGGCTACGCCCTTCCAGTCGGCGT
CGCGCCTGTCCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
55.524 |
93.634 |
0.52 |
| pilU | Vibrio cholerae strain A1552 |
51.695 |
93.899 |
0.485 |
| pilU | Acinetobacter baylyi ADP1 |
50.98 |
94.695 |
0.483 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
40.945 |
100 |
0.414 |
| pilT | Acinetobacter baylyi ADP1 |
41.916 |
88.594 |
0.371 |
| pilT | Acinetobacter nosocomialis M2 |
41.617 |
88.594 |
0.369 |
| pilT | Acinetobacter baumannii D1279779 |
41.617 |
88.594 |
0.369 |
| pilT | Acinetobacter baumannii strain A118 |
41.617 |
88.594 |
0.369 |
| pilT | Pseudomonas aeruginosa PAK |
40.828 |
89.655 |
0.366 |
| pilT | Pseudomonas stutzeri DSM 10701 |
40.533 |
89.655 |
0.363 |