Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | AB987_RS09115 | Genome accession | NZ_CP021347 |
| Coordinates | 1873704..1874138 (+) | Length | 144 a.a. |
| NCBI ID | WP_049590825.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain B8300 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1868704..1879138
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB987_RS09095 (AB987_1839) | - | 1870092..1870979 (+) | 888 | WP_001017325.1 | metal-dependent hydrolase | - |
| AB987_RS09100 (AB987_1840) | - | 1871110..1871700 (+) | 591 | WP_000846931.1 | LemA family protein | - |
| AB987_RS09105 (AB987_1841) | - | 1871722..1872804 (+) | 1083 | WP_001246375.1 | YgcG family protein | - |
| AB987_RS09110 (AB987_1842) | - | 1872798..1873358 (+) | 561 | WP_049590824.1 | TPM domain-containing protein | - |
| AB987_RS09115 (AB987_1843) | pilA | 1873704..1874138 (+) | 435 | WP_049590825.1 | pilin | Machinery gene |
| AB987_RS09120 (AB987_1844) | - | 1874197..1875507 (+) | 1311 | WP_049590826.1 | O-antigen ligase | - |
| AB987_RS09125 (AB987_1845) | - | 1875614..1877242 (+) | 1629 | WP_004742160.1 | PglL family O-oligosaccharyltransferase | - |
| AB987_RS09130 (AB987_1846) | bfr | 1877285..1877749 (-) | 465 | WP_000678123.1 | bacterioferritin | - |
| AB987_RS09135 (AB987_1847) | - | 1877995..1878189 (-) | 195 | WP_000289091.1 | bacterioferritin-associated ferredoxin | - |
| AB987_RS09140 (AB987_1848) | - | 1878399..1878782 (-) | 384 | WP_000090000.1 | RidA family protein | - |
Sequence
Protein
Download Length: 144 a.a. Molecular weight: 14890.06 Da Isoelectric Point: 8.1089
>NTDB_id=230104 AB987_RS09115 WP_049590825.1 1873704..1874138(+) (pilA) [Acinetobacter baumannii strain B8300]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQNYIAKSQVSTGLADITAGKTNAETKLAEGLTAALTDVKTLGLQESTNAC
AITAKIGTDGASNITCTLKGTSQINGKKIEWIRDADNATNGTTGAWRCKTDVAESLRPKSCGAS
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQNYIAKSQVSTGLADITAGKTNAETKLAEGLTAALTDVKTLGLQESTNAC
AITAKIGTDGASNITCTLKGTSQINGKKIEWIRDADNATNGTTGAWRCKTDVAESLRPKSCGAS
Nucleotide
Download Length: 435 bp
>NTDB_id=230104 AB987_RS09115 WP_049590825.1 1873704..1874138(+) (pilA) [Acinetobacter baumannii strain B8300]
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTCATGATCGTGGTTGCCATTATTGGTATTTTGGCAGCGATTGCGAT
CCCTGCTTATCAAAACTATATTGCTAAGTCACAAGTAAGTACTGGTTTGGCTGATATTACTGCTGGTAAGACAAATGCAG
AAACTAAATTAGCAGAAGGTTTAACTGCGGCATTAACTGATGTAAAAACTTTAGGCTTACAAGAATCTACGAATGCTTGT
GCTATTACAGCCAAGATTGGAACTGATGGTGCAAGTAATATTACTTGTACATTGAAAGGTACATCACAAATTAATGGCAA
AAAAATTGAATGGATCCGTGATGCAGATAATGCTACAAATGGTACGACAGGTGCATGGCGCTGTAAAACTGATGTAGCCG
AAAGCTTACGTCCTAAATCATGTGGTGCTTCTTAA
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTCATGATCGTGGTTGCCATTATTGGTATTTTGGCAGCGATTGCGAT
CCCTGCTTATCAAAACTATATTGCTAAGTCACAAGTAAGTACTGGTTTGGCTGATATTACTGCTGGTAAGACAAATGCAG
AAACTAAATTAGCAGAAGGTTTAACTGCGGCATTAACTGATGTAAAAACTTTAGGCTTACAAGAATCTACGAATGCTTGT
GCTATTACAGCCAAGATTGGAACTGATGGTGCAAGTAATATTACTTGTACATTGAAAGGTACATCACAAATTAATGGCAA
AAAAATTGAATGGATCCGTGATGCAGATAATGCTACAAATGGTACGACAGGTGCATGGCGCTGTAAAACTGATGTAGCCG
AAAGCTTACGTCCTAAATCATGTGGTGCTTCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter baumannii strain A118 |
53.741 |
100 |
0.549 |
| pilA | Pseudomonas aeruginosa PAK |
42.767 |
100 |
0.472 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
44.966 |
100 |
0.465 |
| pilA | Vibrio cholerae strain A1552 |
44.966 |
100 |
0.465 |
| pilA | Vibrio cholerae C6706 |
44.966 |
100 |
0.465 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
45.07 |
98.611 |
0.444 |
| comP | Acinetobacter baylyi ADP1 |
41.333 |
100 |
0.431 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
42.553 |
97.917 |
0.417 |
| pilA | Vibrio campbellii strain DS40M4 |
37.821 |
100 |
0.41 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
44 |
86.806 |
0.382 |