Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CAP31_RS01790 Genome accession   NZ_CP021138
Coordinates   342540..343766 (-) Length   408 a.a.
NCBI ID   WP_087445970.1    Uniprot ID   A0A1Y0G5R0
Organism   Sulfuriferula sp. AH1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 337540..348766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAP31_RS01760 (CAP31_01760) ilvA 337727..339253 (-) 1527 WP_087445965.1 threonine ammonia-lyase, biosynthetic -
  CAP31_RS01765 (CAP31_01765) rpiA 339371..340033 (+) 663 WP_189836665.1 ribose-5-phosphate isomerase RpiA -
  CAP31_RS01770 (CAP31_01770) yacG 340035..340223 (-) 189 WP_087445967.1 DNA gyrase inhibitor YacG -
  CAP31_RS01775 (CAP31_01775) zapD 340220..340939 (-) 720 WP_255377122.1 cell division protein ZapD -
  CAP31_RS01780 (CAP31_01780) coaE 341046..341666 (-) 621 WP_087445969.1 dephospho-CoA kinase -
  CAP31_RS01785 (CAP31_01785) pilD 341663..342520 (-) 858 WP_087448208.1 A24 family peptidase Machinery gene
  CAP31_RS01790 (CAP31_01790) pilC 342540..343766 (-) 1227 WP_087445970.1 type II secretion system F family protein Machinery gene
  CAP31_RS01795 (CAP31_01795) pilB 343820..345541 (-) 1722 WP_087445971.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CAP31_RS01800 (CAP31_01800) - 345628..346902 (-) 1275 WP_189836630.1 HlyC/CorC family transporter -
  CAP31_RS01805 (CAP31_01805) - 347001..347306 (-) 306 WP_087448210.1 hypothetical protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44258.31 Da        Isoelectric Point: 10.0468

>NTDB_id=228496 CAP31_RS01790 WP_087445970.1 342540..343766(-) (pilC) [Sulfuriferula sp. AH1]
MAVAKNVKAQKEIAFSWEGTDKSGKKVQGEMIAGGEAVVSSTLRRQGINVKKIKKKSSFGGGKKITPKDVALFTRQLATM
MKSGVPLLQAFDIVAKGHANPAVQKLLIDIKSNIEGGNSLSKSFAKYPLYFDTLYVNLVDAGEQAGILDGVLDRLATYQE
KILAIKGKIKSALFYPISIIVVAFVITAIIMLFVVPAFKELFSSFGADLPAPTLIMMSISDFFVRYWWLIFGSIGGGFWF
FFYTWKRSRKMQEVMDRALLKLPIFGLILEKAAIARWTRTLSTMFAAGVPLVEALSSVAGAAGNIVYYHATLKIRSEVST
GTSLTIAMQNSGIFPNMVQQMVAIGEESGALDSMLGKVADFYEAEVDDAVASISSLMEPVIMVVLGGLIGSMVIAMYLPI
FKMGSVVG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=228496 CAP31_RS01790 WP_087445970.1 342540..343766(-) (pilC) [Sulfuriferula sp. AH1]
ATGGCTGTCGCAAAAAACGTTAAGGCACAAAAAGAAATTGCATTTAGCTGGGAAGGCACGGACAAGAGCGGCAAAAAAGT
ACAAGGCGAAATGATCGCCGGTGGCGAAGCCGTGGTCAGCTCCACGCTACGCCGCCAAGGCATCAACGTCAAAAAAATCA
AGAAAAAGAGCTCATTCGGCGGCGGCAAAAAAATCACCCCTAAAGATGTCGCCCTGTTCACACGGCAACTCGCCACCATG
ATGAAATCCGGCGTACCGCTATTGCAGGCGTTCGACATTGTTGCCAAAGGCCATGCCAATCCGGCAGTACAAAAATTGCT
CATCGACATCAAAAGCAATATCGAAGGCGGTAATAGCCTGAGCAAATCCTTTGCCAAATATCCGCTGTATTTTGACACCT
TATATGTCAATCTGGTCGATGCCGGTGAACAGGCGGGTATTCTCGACGGCGTGCTGGATCGTCTCGCGACCTATCAGGAA
AAGATCCTCGCTATCAAAGGCAAAATCAAATCGGCTTTGTTCTACCCAATATCCATCATTGTTGTGGCATTCGTCATTAC
TGCGATCATCATGCTGTTCGTAGTTCCCGCCTTCAAGGAATTATTCAGCAGCTTTGGTGCCGACTTGCCAGCACCAACGC
TGATCATGATGAGCATTTCCGACTTTTTCGTCCGTTACTGGTGGCTGATCTTCGGTTCTATCGGTGGCGGGTTCTGGTTC
TTTTTCTACACCTGGAAACGCTCAAGGAAAATGCAGGAAGTCATGGATCGCGCGCTGCTCAAACTGCCGATTTTCGGATT
AATCCTGGAAAAAGCAGCCATCGCCCGCTGGACCCGCACCTTGTCTACCATGTTTGCCGCCGGCGTTCCTCTGGTAGAAG
CGCTCAGTTCAGTCGCTGGCGCAGCAGGCAATATCGTCTATTACCACGCCACGCTAAAAATCCGTTCGGAAGTCAGTACA
GGCACCAGCCTCACCATTGCCATGCAAAATAGCGGTATTTTCCCCAACATGGTGCAGCAAATGGTAGCCATCGGCGAAGA
ATCCGGTGCACTGGACTCCATGCTGGGGAAAGTTGCCGATTTTTACGAAGCCGAAGTAGATGATGCGGTGGCATCAATCT
CCAGCCTGATGGAACCCGTCATCATGGTAGTGCTGGGCGGCCTGATTGGCAGCATGGTTATTGCCATGTATCTGCCGATC
TTCAAAATGGGCAGTGTGGTCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(73-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0G5R0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

55.779

97.549

0.544
  pilC Pseudomonas stutzeri DSM 10701

53.731

98.529

0.529
  pilC Acinetobacter baylyi ADP1

52.97

99.02

0.525
  pilC Acinetobacter baumannii D1279779

52.228

99.02

0.517
  pilG Neisseria gonorrhoeae MS11

49.25

98.039

0.483
  pilG Neisseria meningitidis 44/76-A

48.878

98.284

0.48
  pilC Vibrio campbellii strain DS40M4

39.552

98.529

0.39
  pilC Vibrio cholerae strain A1552

40.05

97.304

0.39
  pilC Thermus thermophilus HB27

37.093

97.794

0.363

Multiple sequence alignment