Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   CAP31_RS01785 Genome accession   NZ_CP021138
Coordinates   341663..342520 (-) Length   285 a.a.
NCBI ID   WP_087448208.1    Uniprot ID   A0A1Y0GB05
Organism   Sulfuriferula sp. AH1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336663..347520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAP31_RS01760 (CAP31_01760) ilvA 337727..339253 (-) 1527 WP_087445965.1 threonine ammonia-lyase, biosynthetic -
  CAP31_RS01765 (CAP31_01765) rpiA 339371..340033 (+) 663 WP_189836665.1 ribose-5-phosphate isomerase RpiA -
  CAP31_RS01770 (CAP31_01770) yacG 340035..340223 (-) 189 WP_087445967.1 DNA gyrase inhibitor YacG -
  CAP31_RS01775 (CAP31_01775) zapD 340220..340939 (-) 720 WP_255377122.1 cell division protein ZapD -
  CAP31_RS01780 (CAP31_01780) coaE 341046..341666 (-) 621 WP_087445969.1 dephospho-CoA kinase -
  CAP31_RS01785 (CAP31_01785) pilD 341663..342520 (-) 858 WP_087448208.1 A24 family peptidase Machinery gene
  CAP31_RS01790 (CAP31_01790) pilC 342540..343766 (-) 1227 WP_087445970.1 type II secretion system F family protein Machinery gene
  CAP31_RS01795 (CAP31_01795) pilB 343820..345541 (-) 1722 WP_087445971.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CAP31_RS01800 (CAP31_01800) - 345628..346902 (-) 1275 WP_189836630.1 HlyC/CorC family transporter -
  CAP31_RS01805 (CAP31_01805) - 347001..347306 (-) 306 WP_087448210.1 hypothetical protein -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 30660.47 Da        Isoelectric Point: 8.2201

>NTDB_id=228495 CAP31_RS01785 WP_087448208.1 341663..342520(-) (pilD) [Sulfuriferula sp. AH1]
MLALMQADSRLFTIACGIVGLLVGSFLNVVIYRLPKIMEREWREQCAELSGQHLPEQTPYSLSAPRSTCTSCGHKISATE
NVPILSYLWLRGKCAGCGMRISPRYPVVEAITGILSAAAAGYFGFGLAAVAAIIFIWALIALTFIDFDTQLLPDSITLPL
LWSGLFFNLQATFVPLQSAVIGAIAGYLSLWGIYWLFKLATGKEGMGYGDFKLLAAIGAWLGWAMLPLVILLSSAVGAII
GIILIILAKQGRSVPIPFGPYLAGGGIIALFWGKDILHSYLATLT

Nucleotide


Download         Length: 858 bp        

>NTDB_id=228495 CAP31_RS01785 WP_087448208.1 341663..342520(-) (pilD) [Sulfuriferula sp. AH1]
ATGCTCGCTTTAATGCAAGCCGACTCCCGGCTATTCACTATCGCATGCGGGATAGTGGGCCTGCTGGTCGGCAGTTTTCT
CAATGTGGTCATTTACCGCCTGCCCAAAATCATGGAGCGCGAGTGGCGTGAACAATGCGCCGAACTCAGCGGCCAACACC
TGCCGGAGCAAACCCCATACAGCTTGTCCGCCCCTCGTTCCACATGCACATCGTGCGGACACAAGATCAGCGCGACAGAG
AATGTTCCGATACTCAGCTACCTGTGGTTGCGAGGCAAATGCGCGGGTTGCGGTATGCGCATCAGCCCGCGCTACCCGGT
GGTAGAAGCAATCACCGGGATATTGTCCGCGGCGGCCGCCGGTTATTTCGGTTTTGGTCTCGCCGCCGTGGCCGCGATTA
TTTTCATCTGGGCATTAATCGCACTTACCTTCATCGATTTCGACACTCAATTACTGCCCGACAGCATCACCCTGCCATTA
TTATGGTCAGGCCTGTTTTTCAACCTGCAAGCCACGTTCGTGCCACTCCAATCGGCCGTCATCGGCGCAATCGCGGGTTA
TCTGAGCTTGTGGGGAATATATTGGCTATTCAAACTCGCCACCGGGAAAGAGGGCATGGGTTATGGTGACTTTAAATTGC
TGGCAGCAATCGGTGCATGGTTAGGCTGGGCCATGTTACCGCTGGTGATTTTATTATCCTCTGCTGTAGGCGCAATAATC
GGCATCATCCTCATCATCCTTGCCAAACAAGGACGCTCGGTACCTATCCCCTTCGGCCCGTACCTTGCTGGAGGAGGGAT
CATCGCCTTGTTTTGGGGCAAGGATATTCTGCATAGCTATTTAGCGACGCTGACATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-120)

Type IV leader peptidase family (Peptidase_A24)

(134-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0GB05

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

56.159

96.842

0.544
  pilD Vibrio campbellii strain DS40M4

53.497

100

0.537
  pilD Acinetobacter baumannii D1279779

49.259

94.737

0.467
  pilD Acinetobacter nosocomialis M2

49.259

94.737

0.467
  pilD Neisseria gonorrhoeae MS11

50.781

89.825

0.456

Multiple sequence alignment