Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   A6J85_RS05025 Genome accession   NZ_CP020450
Coordinates   992384..992779 (-) Length   131 a.a.
NCBI ID   WP_061582704.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_257     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 987384..997779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J85_RS04995 (A6J85_04940) - 987860..988558 (+) 699 WP_008810048.1 response regulator transcription factor -
  A6J85_RS05000 (A6J85_04945) - 988525..989562 (+) 1038 WP_061582703.1 sensor histidine kinase KdpD -
  A6J85_RS05010 (A6J85_04950) - 989859..990062 (+) 204 WP_002896748.1 helix-turn-helix transcriptional regulator -
  A6J85_RS11100 - 990059..990223 (+) 165 WP_004193711.1 hypothetical protein -
  A6J85_RS05015 (A6J85_04955) - 990233..990667 (+) 435 WP_008810046.1 hypothetical protein -
  A6J85_RS05020 (A6J85_04960) - 990721..992205 (-) 1485 WP_008810045.1 DUF1846 domain-containing protein -
  A6J85_RS05025 (A6J85_04965) ssbB/cilA 992384..992779 (-) 396 WP_061582704.1 single-stranded DNA-binding protein Machinery gene
  A6J85_RS05030 (A6J85_04970) ytpR 992843..993469 (-) 627 WP_008810043.1 YtpR family tRNA-binding protein -
  A6J85_RS05035 (A6J85_04975) - 993486..993803 (-) 318 WP_012130918.1 thioredoxin family protein -
  A6J85_RS05040 (A6J85_04980) - 993803..994087 (-) 285 WP_045634148.1 DUF4651 domain-containing protein -
  A6J85_RS05045 (A6J85_04985) pepA 994268..995335 (+) 1068 WP_045504464.1 glutamyl aminopeptidase -
  A6J85_RS05050 (A6J85_04990) - 995617..996570 (+) 954 WP_020992699.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14805.75 Da        Isoelectric Point: 7.3169

>NTDB_id=223181 A6J85_RS05025 WP_061582704.1 992384..992779(-) (ssbB/cilA) [Streptococcus gordonii strain FDAARGOS_257]
MYNKVIIIGRLTATPELHKTSNEKSVTRATIAVNRRYKDQNGEREADFINIVLWGKLAETLASYASKGSLISLDGELRTR
RYEKDGVTHYITEVLGHGFQLLESRAQRAIRENNSGADLADLVLEEKELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=223181 A6J85_RS05025 WP_061582704.1 992384..992779(-) (ssbB/cilA) [Streptococcus gordonii strain FDAARGOS_257]
ATGTACAATAAAGTCATTATTATCGGTCGTTTGACGGCCACACCAGAATTGCACAAAACTAGCAATGAAAAATCTGTCAC
ACGCGCAACGATTGCGGTCAATCGCCGTTACAAGGATCAAAATGGTGAGCGCGAAGCAGACTTCATTAATATCGTCCTTT
GGGGCAAATTGGCTGAGACTCTAGCTAGTTATGCCAGCAAAGGAAGCTTGATCTCTCTGGACGGCGAACTACGGACCCGT
CGTTATGAAAAAGACGGTGTGACTCACTATATCACAGAAGTCCTTGGACATGGTTTCCAGCTTCTTGAAAGTCGTGCCCA
GCGGGCTATTCGTGAAAATAATTCTGGAGCCGATTTGGCTGACCTAGTCTTGGAAGAAAAGGAACTTCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae Rx1

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae D39

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae R6

83.206

100

0.832
  ssbB/cilA Streptococcus mitis NCTC 12261

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae TIGR4

83.206

100

0.832
  ssbB/cilA Streptococcus mitis SK321

82.443

100

0.824
  ssbA Streptococcus mutans UA159

79.389

100

0.794
  ssbB Streptococcus sobrinus strain NIDR 6715-7

73.282

100

0.733
  ssbB Lactococcus lactis subsp. cremoris KW2

63.393

85.496

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

49.057

80.916

0.397
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.113

80.916

0.389

Multiple sequence alignment