Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BVH74_RS08515 Genome accession   NZ_CP020100
Coordinates   1852202..1853458 (-) Length   418 a.a.
NCBI ID   WP_080049642.1    Uniprot ID   A0A1V0B4C8
Organism   Halopseudomonas phragmitis strain S-6-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1847202..1858458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVH74_RS08480 (BVH74_08480) lspA 1847288..1847782 (+) 495 WP_080049635.1 signal peptidase II -
  BVH74_RS08485 (BVH74_08485) fkpB 1847808..1848239 (+) 432 WP_080049636.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  BVH74_RS08490 (BVH74_08490) ispH 1848401..1849348 (+) 948 WP_080049637.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  BVH74_RS08495 (BVH74_08495) - 1849456..1850388 (-) 933 WP_080049638.1 Nudix family hydrolase -
  BVH74_RS08500 (BVH74_08500) yacG 1850530..1850721 (-) 192 WP_080049639.1 DNA gyrase inhibitor YacG -
  BVH74_RS08505 (BVH74_08505) coaE 1850718..1851323 (-) 606 WP_080049640.1 dephospho-CoA kinase -
  BVH74_RS08510 (BVH74_08510) pilD 1851328..1852200 (-) 873 WP_080049641.1 A24 family peptidase Machinery gene
  BVH74_RS08515 (BVH74_08515) pilC 1852202..1853458 (-) 1257 WP_080049642.1 type II secretion system F family protein Machinery gene
  BVH74_RS08520 (BVH74_08520) pilB 1853462..1855165 (-) 1704 WP_080049643.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BVH74_RS08525 (BVH74_08525) pilA/pilA1 1855640..1856071 (+) 432 WP_080049644.1 pilin Machinery gene
  BVH74_RS18770 - 1856220..1856474 (+) 255 WP_155121702.1 hypothetical protein -
  BVH74_RS08530 (BVH74_08530) - 1856627..1857154 (-) 528 WP_080049645.1 GspH/FimT family pseudopilin -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45654.64 Da        Isoelectric Point: 9.7739

>NTDB_id=221090 BVH74_RS08515 WP_080049642.1 1852202..1853458(-) (pilC) [Halopseudomonas phragmitis strain S-6-2]
MAQQAAVKKPVTAKKAKEEKVYAYKWEGKDRKGTKVTGEMQGANAALIKAQLRKQGVLVTKVNKKSTLFGKRAKPIKPLD
IAFFTRQLATMMEAGVPIIQSFEIIAEGAENPNLAKLVNDIKVDVAAGNTLADSLRKHPKYFDDLFCNLVQSGEQSGRLE
SLLDRIATYKEKTEALKAKIKKAMTYPIAVIVVAVIVTAILLLKVVPQFKEVFSNFGAELPAFTLFVIGLSEWLQSWWFI
ILIGFIALGFAYKQIHLRSKPFRDGQDRALLKAPVVGEIIYQAAVARYARTLSTTFAAGVPLVDALDSVAGAAGNVVFYN
AVMKIKDDVSAGTQLNFAMRTTNVFPSLAVQMAGIGEESGSLDEMLEKVADYYEAEVDNKVDNLTTLLEPLIMSVLGILV
GGLIIAMYLPIFQLGAVV

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=221090 BVH74_RS08515 WP_080049642.1 1852202..1853458(-) (pilC) [Halopseudomonas phragmitis strain S-6-2]
ATGGCGCAACAAGCAGCAGTCAAAAAGCCTGTCACAGCCAAAAAGGCCAAAGAAGAAAAGGTCTACGCCTACAAGTGGGA
AGGCAAGGACCGCAAGGGCACCAAGGTGACCGGCGAGATGCAGGGCGCCAACGCCGCGCTGATCAAGGCGCAACTGCGCA
AGCAGGGAGTACTGGTCACCAAGGTGAACAAGAAGTCGACCCTGTTCGGCAAACGCGCCAAGCCGATCAAGCCACTGGAT
ATCGCCTTCTTTACCCGTCAGTTGGCCACCATGATGGAGGCCGGGGTGCCAATTATCCAGTCCTTCGAGATTATTGCCGA
GGGCGCGGAAAACCCCAATCTGGCCAAGCTGGTCAACGATATTAAGGTTGATGTAGCCGCCGGTAACACCCTGGCCGACT
CGCTACGCAAGCACCCCAAGTATTTCGACGACCTGTTTTGCAACCTGGTGCAGTCTGGCGAACAGTCAGGCCGACTGGAG
TCGCTGCTTGACCGCATCGCCACCTACAAGGAAAAGACCGAAGCGCTCAAGGCCAAGATCAAGAAGGCCATGACCTACCC
GATTGCAGTTATCGTCGTGGCGGTTATCGTTACCGCCATTCTGCTGCTCAAGGTGGTGCCACAGTTCAAGGAGGTATTCT
CCAACTTTGGCGCCGAATTGCCAGCCTTTACTCTATTTGTCATCGGCCTATCGGAATGGCTGCAATCCTGGTGGTTCATC
ATTTTGATTGGCTTCATCGCTCTTGGCTTTGCCTATAAGCAGATCCACCTCCGCTCTAAGCCGTTCCGTGACGGCCAGGA
TCGGGCCCTGCTCAAGGCGCCCGTAGTTGGTGAGATCATCTACCAGGCAGCAGTAGCACGTTACGCTCGCACCCTGTCGA
CCACCTTCGCCGCTGGTGTACCGCTGGTCGATGCGCTGGACTCGGTCGCCGGTGCGGCGGGCAACGTGGTGTTCTATAAC
GCCGTAATGAAGATCAAGGACGACGTATCCGCCGGCACCCAGCTCAACTTCGCCATGCGAACCACCAATGTATTCCCCTC
ATTGGCAGTACAGATGGCCGGCATTGGTGAAGAGTCCGGCTCGCTGGATGAAATGCTGGAAAAGGTCGCCGACTACTACG
AGGCCGAGGTAGACAACAAGGTCGATAACCTCACCACTCTGCTCGAACCGCTGATCATGTCTGTTCTGGGTATTCTGGTG
GGCGGCCTGATCATCGCCATGTACCTGCCGATCTTCCAGTTGGGCGCCGTCGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(289-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0B4C8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

69.704

97.129

0.677
  pilC Acinetobacter baylyi ADP1

59.024

98.086

0.579
  pilC Acinetobacter baumannii D1279779

58.968

97.368

0.574
  pilC Legionella pneumophila strain ERS1305867

53.769

95.215

0.512
  pilG Neisseria meningitidis 44/76-A

44.472

97.368

0.433
  pilG Neisseria gonorrhoeae MS11

43.735

97.368

0.426
  pilC Vibrio cholerae strain A1552

41.414

94.737

0.392
  pilC Vibrio campbellii strain DS40M4

40.909

94.737

0.388

Multiple sequence alignment