Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | Vc3S01_RS12640 | Genome accession | NZ_CP020076 |
| Coordinates | 2617271..2617558 (-) | Length | 95 a.a. |
| NCBI ID | WP_077200976.1 | Uniprot ID | - |
| Organism | Vibrio campbellii strain 20130629003S01 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2612271..2622558
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Vc3S01_RS12615 (Vc3S01_2314) | - | 2612712..2613926 (+) | 1215 | WP_029788618.1 | pyridoxal phosphate-dependent aminotransferase | - |
| Vc3S01_RS12620 (Vc3S01_2315) | yfbR | 2614010..2614594 (+) | 585 | WP_005425568.1 | 5'-deoxynucleotidase | - |
| Vc3S01_RS12625 (Vc3S01_2316) | - | 2614598..2615932 (+) | 1335 | WP_170926973.1 | anti-phage deoxyguanosine triphosphatase | - |
| Vc3S01_RS12630 (Vc3S01_2317) | - | 2615953..2616570 (-) | 618 | WP_077200975.1 | DTW domain-containing protein | - |
| Vc3S01_RS12635 (Vc3S01_2318) | rrtA | 2616574..2617125 (+) | 552 | WP_045377767.1 | rhombosortase | - |
| Vc3S01_RS12640 (Vc3S01_2319) | comEA | 2617271..2617558 (-) | 288 | WP_077200976.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| Vc3S01_RS12645 (Vc3S01_2320) | ppiD | 2617704..2619563 (-) | 1860 | WP_038890556.1 | peptidylprolyl isomerase | - |
| Vc3S01_RS12650 (Vc3S01_2321) | - | 2619778..2620050 (-) | 273 | WP_005430934.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 95 a.a. Molecular weight: 10461.19 Da Isoelectric Point: 5.8692
>NTDB_id=220867 Vc3S01_RS12640 WP_077200976.1 2617271..2617558(-) (comEA) [Vibrio campbellii strain 20130629003S01]
MKWMLTLCLLILAPMSLAETKTKADKYEGIEITVNVNSATAEEIATLLNGIGEKKAQDIVEYRNEHGPFKTAADLTKVKG
IGEATVKKNEDRILL
MKWMLTLCLLILAPMSLAETKTKADKYEGIEITVNVNSATAEEIATLLNGIGEKKAQDIVEYRNEHGPFKTAADLTKVKG
IGEATVKKNEDRILL
Nucleotide
Download Length: 288 bp
>NTDB_id=220867 Vc3S01_RS12640 WP_077200976.1 2617271..2617558(-) (comEA) [Vibrio campbellii strain 20130629003S01]
ATGAAATGGATGTTAACGCTGTGCTTATTGATACTCGCGCCGATGAGCTTGGCGGAAACAAAGACTAAAGCAGATAAGTA
TGAAGGTATTGAGATTACGGTTAACGTTAACTCTGCCACTGCAGAAGAGATTGCGACGCTACTTAATGGTATTGGTGAGA
AGAAAGCGCAAGATATTGTTGAGTATCGCAACGAGCACGGTCCATTTAAAACAGCTGCGGATCTTACTAAGGTGAAAGGC
ATCGGTGAGGCGACTGTGAAGAAGAACGAAGACCGCATCCTGCTGTAA
ATGAAATGGATGTTAACGCTGTGCTTATTGATACTCGCGCCGATGAGCTTGGCGGAAACAAAGACTAAAGCAGATAAGTA
TGAAGGTATTGAGATTACGGTTAACGTTAACTCTGCCACTGCAGAAGAGATTGCGACGCTACTTAATGGTATTGGTGAGA
AGAAAGCGCAAGATATTGTTGAGTATCGCAACGAGCACGGTCCATTTAAAACAGCTGCGGATCTTACTAAGGTGAAAGGC
ATCGGTGAGGCGACTGTGAAGAAGAACGAAGACCGCATCCTGCTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio campbellii strain DS40M4 |
95.789 |
100 |
0.958 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
81.053 |
100 |
0.811 |
| comEA | Vibrio cholerae C6706 |
58.333 |
100 |
0.589 |
| comEA | Vibrio cholerae strain A1552 |
58.333 |
100 |
0.589 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
39.286 |
100 |
0.463 |
| comEA | Acinetobacter baumannii strain A118 |
31.707 |
100 |
0.411 |
| comE | Neisseria gonorrhoeae MS11 |
40.86 |
97.895 |
0.4 |
| comE | Neisseria gonorrhoeae MS11 |
40.86 |
97.895 |
0.4 |
| comE | Neisseria gonorrhoeae MS11 |
40.86 |
97.895 |
0.4 |
| comE | Neisseria gonorrhoeae MS11 |
40.86 |
97.895 |
0.4 |
| comEA | Acinetobacter baylyi ADP1 |
48.649 |
77.895 |
0.379 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
56.452 |
65.263 |
0.368 |