Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BVH73_RS05615 Genome accession   NZ_CP020046
Coordinates   1202203..1203423 (+) Length   406 a.a.
NCBI ID   WP_079416852.1    Uniprot ID   -
Organism   Thiomonas intermedia strain ATCC 15466     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1197203..1208423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVH73_RS05590 rpmA 1198197..1198454 (-) 258 WP_079416843.1 50S ribosomal protein L27 -
  BVH73_RS05595 rplU 1198467..1198778 (-) 312 WP_079416845.1 50S ribosomal protein L21 -
  BVH73_RS05600 - 1199110..1200120 (+) 1011 WP_079416847.1 polyprenyl synthetase family protein -
  BVH73_RS05610 pilB 1200449..1202188 (+) 1740 WP_079416849.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BVH73_RS05615 pilC 1202203..1203423 (+) 1221 WP_079416852.1 type II secretion system F family protein Machinery gene
  BVH73_RS05620 pilD 1203423..1204292 (+) 870 WP_079416855.1 A24 family peptidase Machinery gene
  BVH73_RS05625 coaE 1204289..1204909 (+) 621 WP_079416858.1 dephospho-CoA kinase -
  BVH73_RS05630 zapD 1205021..1205773 (+) 753 WP_079416861.1 cell division protein ZapD -
  BVH73_RS05635 - 1205780..1206031 (+) 252 WP_079416863.1 DNA gyrase inhibitor YacG -
  BVH73_RS05640 - 1206056..1206472 (-) 417 WP_079416865.1 NUDIX domain-containing protein -
  BVH73_RS05645 - 1206469..1207419 (-) 951 WP_245800428.1 ATP-binding protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44348.25 Da        Isoelectric Point: 10.1088

>NTDB_id=220668 BVH73_RS05615 WP_079416852.1 1202203..1203423(+) (pilC) [Thiomonas intermedia strain ATCC 15466]
MATATARTAKEALFEWEGKDRQGKLQRGELRAGSEAIVSASLRRQGILVTKVKKRRLTSGKAIKAKDISTFTRQMSTMIK
AGVPLLQSFDIVGRGHPNPNMARLIMDIRGDVETGTSLSNAFRKHPKYFDALYCNLVEAGETAGMLELVLDRLATYQEKS
LAIRSKIKSALTYPIAVMVVAFVVVSIIMLFVVPVFTDVFSQFGASLPAPTLMVVAMSNFFVHYWYILFGTIFLGGYFFL
QSWKKSIKMQESMDRLLLRVPVFGKLVRLGALARWTRTLATMFGAGVPLVEALDAVGGAAGNIVYLRATEKIQQDVSTGT
SLTTSMQTQGVFPPLVIQLTSIGEESGSLDSMLSKAADIYEAEVDELVKNLSALLEPIIIVFLGVIIGGLVVAMYLPIFN
LGKVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=220668 BVH73_RS05615 WP_079416852.1 1202203..1203423(+) (pilC) [Thiomonas intermedia strain ATCC 15466]
ATGGCTACAGCGACGGCGCGAACGGCGAAGGAAGCGCTTTTCGAGTGGGAAGGCAAGGACCGGCAGGGCAAGCTCCAACG
CGGCGAACTGCGCGCGGGCAGCGAAGCCATCGTTTCCGCCTCACTGCGGCGCCAGGGCATTCTGGTCACCAAGGTCAAGA
AGCGCCGGCTGACCAGCGGCAAGGCCATCAAGGCCAAGGACATTTCCACCTTCACGCGGCAGATGTCCACCATGATCAAG
GCTGGCGTGCCGCTGCTGCAGTCTTTTGACATCGTCGGACGCGGACACCCCAACCCGAACATGGCCCGGCTGATCATGGA
CATCCGCGGCGACGTGGAAACCGGCACCAGCCTGTCCAACGCCTTTCGCAAGCATCCCAAATACTTCGACGCGCTCTACT
GCAACCTGGTCGAAGCGGGCGAGACGGCCGGTATGCTCGAACTGGTGCTCGACCGTCTGGCCACGTATCAGGAAAAGTCG
CTGGCCATCCGCAGCAAGATCAAAAGCGCGCTCACCTACCCGATTGCGGTGATGGTCGTGGCCTTCGTGGTCGTGTCCAT
CATCATGCTGTTCGTCGTGCCCGTGTTCACCGACGTGTTCTCGCAGTTCGGCGCGAGTCTGCCCGCCCCCACGCTGATGG
TGGTGGCCATGTCCAATTTCTTCGTGCATTACTGGTACATCCTGTTCGGCACCATTTTTCTCGGCGGCTATTTCTTTCTG
CAGTCGTGGAAGAAATCGATCAAGATGCAGGAAAGCATGGATCGCTTGCTGCTGCGCGTCCCCGTTTTCGGCAAACTGGT
CCGGCTGGGCGCCCTGGCGCGCTGGACCCGCACGCTGGCCACGATGTTCGGCGCCGGGGTGCCGCTGGTCGAGGCGCTCG
ACGCCGTGGGCGGTGCCGCGGGCAATATCGTCTATCTCCGCGCCACCGAAAAGATTCAGCAAGATGTGTCGACAGGCACC
AGTCTGACCACGTCGATGCAGACTCAGGGCGTGTTTCCGCCGCTGGTCATCCAGCTGACATCCATCGGTGAAGAGTCCGG
CTCGCTCGATTCGATGTTGAGCAAGGCCGCCGACATCTACGAAGCCGAAGTGGACGAGCTGGTGAAAAACCTCTCCGCCC
TGCTCGAGCCCATCATCATCGTGTTTCTGGGCGTGATCATCGGCGGATTGGTGGTGGCGATGTATCTGCCGATCTTCAAC
CTGGGCAAGGTCGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.736

99.015

0.522
  pilG Neisseria gonorrhoeae MS11

52.393

97.783

0.512
  pilG Neisseria meningitidis 44/76-A

52.01

98.03

0.51
  pilC Legionella pneumophila strain ERS1305867

49.497

98.03

0.485
  pilC Acinetobacter baylyi ADP1

47.666

100

0.478
  pilC Acinetobacter baumannii D1279779

48.363

97.783

0.473
  pilC Vibrio campbellii strain DS40M4

42.289

99.015

0.419
  pilC Vibrio cholerae strain A1552

40.898

98.768

0.404
  pilC Thermus thermophilus HB27

38.679

100

0.404

Multiple sequence alignment