Detailed information NTG0220669

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BVH73_RS05620
• Genome accession: NZ_CP020046
• Coordinates: 1203423..1204292 (+)
• Length: 289 a.a.
• NCBI ID: WP_079416855.1
• Uniprot ID: -
• Organism: Thiomonas intermedia strain ATCC 15466
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1198423..1209292

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BVH73_RS05595	rplU	1198467..1198778 (-)	312	WP_079416845.1	50S ribosomal protein L21	-
BVH73_RS05600	-	1199110..1200120 (+)	1011	WP_079416847.1	polyprenyl synthetase family protein	-
BVH73_RS05610	pilB	1200449..1202188 (+)	1740	WP_079416849.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BVH73_RS05615	pilC	1202203..1203423 (+)	1221	WP_079416852.1	type II secretion system F family protein	Machinery gene
BVH73_RS05620	pilD	1203423..1204292 (+)	870	WP_079416855.1	A24 family peptidase	Machinery gene
BVH73_RS05625	coaE	1204289..1204909 (+)	621	WP_079416858.1	dephospho-CoA kinase	-
BVH73_RS05630	zapD	1205021..1205773 (+)	753	WP_079416861.1	cell division protein ZapD	-
BVH73_RS05635	-	1205780..1206031 (+)	252	WP_079416863.1	DNA gyrase inhibitor YacG	-
BVH73_RS05640	-	1206056..1206472 (-)	417	WP_079416865.1	NUDIX domain-containing protein	-
BVH73_RS05645	-	1206469..1207419 (-)	951	WP_245800428.1	ATP-binding protein	-
BVH73_RS05650	argJ	1207434..1208669 (-)	1236	WP_079416867.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 30964.82 Da
• Isoelectric Point: 6.3201

>NTDB_id=220669 BVH73_RS05620 WP_079416855.1 1203423..1204292(+) (pilD) [Thiomonas intermedia strain ATCC 15466]
MPDFSAAPLSFWIVAAGLIGLAVGSFLNVVIYRLPVMMERQWQADAHATLHPDDEAPPAERFDLAAPRSRCPSCGHAITW
WENIPVLSFLFLRGKCSACGTAISWRYPLVELMTALLSAAVVVRWGASWDSVAYIALLWALIALALIDFDTTLLPDSITL
PLLWLGLLWHAVLHPAQLSSAVWGAVVGYLALWIVYQGFKLLTGKEGMGFGDFKLLAALGAWFGVAALLPIILLSSICGA
VIGIALQALKLTERGRPIPFGPFLAAAGILLLLIGPDTLVAMLLPSAGA

Nucleotide

• Length: 870 bp

>NTDB_id=220669 BVH73_RS05620 WP_079416855.1 1203423..1204292(+) (pilD) [Thiomonas intermedia strain ATCC 15466]
ATGCCCGATTTCAGCGCAGCGCCCCTGAGCTTCTGGATCGTGGCTGCCGGGCTGATCGGCCTGGCGGTGGGCAGCTTTCT
GAACGTGGTCATCTATCGCCTGCCGGTGATGATGGAGCGGCAGTGGCAGGCCGATGCCCACGCCACCCTCCATCCCGATG
ACGAAGCCCCACCCGCCGAGCGCTTCGACCTTGCGGCACCGCGCTCGCGCTGCCCCTCCTGCGGCCATGCCATCACCTGG
TGGGAAAACATTCCGGTTCTGAGTTTCCTGTTTTTGCGCGGCAAGTGTTCGGCCTGCGGCACGGCGATTTCGTGGCGCTA
TCCGCTGGTGGAGTTGATGACCGCCTTGCTCAGCGCCGCCGTGGTGGTTCGGTGGGGCGCAAGCTGGGACAGCGTGGCCT
ACATCGCCCTGCTCTGGGCGCTCATCGCCCTGGCCCTGATCGACTTCGACACCACCTTGCTGCCCGACAGCATCACCCTG
CCCCTGCTTTGGCTCGGGCTACTGTGGCATGCGGTCCTGCATCCAGCGCAACTCTCCAGTGCGGTGTGGGGTGCGGTGGT
CGGGTACCTGGCGCTGTGGATCGTGTACCAGGGATTCAAGCTGCTGACGGGCAAGGAGGGCATGGGCTTTGGTGACTTCA
AGCTGCTGGCGGCGCTCGGCGCCTGGTTTGGCGTCGCGGCACTCCTGCCGATCATTCTGCTGTCCAGCATTTGCGGCGCC
GTAATCGGCATTGCGCTGCAGGCGCTCAAGCTGACCGAGCGCGGACGGCCGATTCCCTTTGGCCCCTTCCTGGCCGCCGC
CGGCATTCTTCTGCTGTTGATCGGGCCGGACACCCTGGTGGCGATGCTGCTGCCCAGCGCAGGGGCATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (136-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	49.291	97.578	0.481
pilD	Vibrio cholerae strain A1552	51.301	93.08	0.478
pilD	Acinetobacter baumannii D1279779	52.157	88.235	0.46
pilD	Acinetobacter nosocomialis M2	51.373	88.235	0.453
pilD	Neisseria gonorrhoeae MS11	50.391	88.581	0.446