Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OTEC02_RS17120 Genome accession   NZ_CP020015
Coordinates   3613690..3614916 (+) Length   408 a.a.
NCBI ID   WP_016144166.1    Uniprot ID   A0A151YPL8
Organism   Acinetobacter lactucae strain OTEC-02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3608690..3619916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTEC02_RS17085 (OTEC02_17085) rimP 3609360..3609884 (-) 525 WP_016144169.1 ribosome maturation factor RimP -
  OTEC02_RS17105 (OTEC02_17105) secG 3610522..3610851 (-) 330 WP_002115012.1 preprotein translocase subunit SecG -
  OTEC02_RS17110 (OTEC02_17110) tpiA 3610864..3611658 (-) 795 WP_057104882.1 triose-phosphate isomerase -
  OTEC02_RS17115 (OTEC02_17115) pilB 3611950..3613662 (+) 1713 WP_081175451.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OTEC02_RS17120 (OTEC02_17120) pilC 3613690..3614916 (+) 1227 WP_016144166.1 type II secretion system F family protein Machinery gene
  OTEC02_RS19330 (OTEC02_17125) pilD 3614916..3615776 (+) 861 WP_016144165.1 prepilin peptidase Machinery gene
  OTEC02_RS17130 (OTEC02_17130) coaE 3615778..3616374 (+) 597 WP_081175453.1 dephospho-CoA kinase -
  OTEC02_RS17135 (OTEC02_17135) - 3616371..3617285 (-) 915 WP_081175455.1 DMT family transporter -
  OTEC02_RS17140 (OTEC02_17140) rlmB 3617321..3618070 (-) 750 WP_005079348.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  OTEC02_RS17145 (OTEC02_17145) - 3618173..3618499 (-) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  OTEC02_RS17150 (OTEC02_17150) - 3618576..3619886 (-) 1311 WP_081175457.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45040.49 Da        Isoelectric Point: 9.8960

>NTDB_id=220107 OTEC02_RS17120 WP_016144166.1 3613690..3614916(+) (pilC) [Acinetobacter lactucae strain OTEC-02]
MTVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAIIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=220107 OTEC02_RS17120 WP_016144166.1 3613690..3614916(+) (pilC) [Acinetobacter lactucae strain OTEC-02]
ATGACTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGAGA
ACTTCCAGCTAAGAATATGGCCTTAGCCAAAGTCACCCTACGCAAACAAGGGGTAACTGTCCGTAATATTCGAGAAAAGC
GTAAAAATATTCTTGAGGGTTTATTCAAGAAGAAAGTATCAACACTCGATATCACGATTTTTACCAGACAACTTGCAACA
ATGATGAAAGCAGGGGTTCCACTGGTACAAGGCTTTGAAATTGTAGCGGAAGGCCTAGAAAACCCAGCCATGCGCGAGGT
AGTACTTGGTATTAAAGGCGAAGTTGAAGGTGGTAGTACCTTTGCTTCGGCTTTAAGAAAGTATCCTCAACACTTCGATA
ACTTGTTTTGTTCTCTTGTAGAGTCTGGCGAACAATCTGGCGCACTTGAAACCATGTTGGATCGCGTGGCAATTTACAAA
GAAAAAAGTGAATTGCTTAAACAGAAAATTAAGAAGGCTATGAAATATCCAGCAACGGTTATCGTGGTTGCCGTGGTTGT
TACCATTATTTTGATGGTTAAAGTCGTTCCCGTTTTCCAAGACCTGTTTTCATCTTTTGGTGCAGATTTACCTGCATTCA
CCCAAATGGTCGTAAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATCATTGTAATTGGAGCAATTATTGCT
GCATTTTTGGAAGCCAAAAAGCGTAGTAAAAAATTCCGTGATGGTTTAGATAAACTCACCCTGAAACTACCTATCTTTGG
TGATCTGGTTTACAAGGCGATTATTGCCCGTTATAGCCGTACTTTAGCCACCACGTTTGCCGCAGGTGTTCCGCTTATTG
ATGCGCTTGAGTCAACGGCTGGTGCAACCAACAATGTTATTTATGAACAAGCCGTCATGAAAATTCGTGAAGATGTGGCT
ACAGGCCAACAACTCCAATTTGCGATGCGCGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTTGATAATGCCGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTGCTTGTAGGTGGGCTAGTGATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTCATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A151YPL8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.549

100

0.975
  pilC Acinetobacter baylyi ADP1

85.784

100

0.858
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

52.593

99.265

0.522
  pilG Neisseria gonorrhoeae MS11

45.98

97.549

0.449
  pilG Neisseria meningitidis 44/76-A

45.98

97.549

0.449
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.587

100

0.407
  pilC Thermus thermophilus HB27

36.908

98.284

0.363

Multiple sequence alignment