Detailed information NTG0220117

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OTEC02_RS19330
• Genome accession: NZ_CP020015
• Coordinates: 3614916..3615776 (+)
• Length: 286 a.a.
• NCBI ID: WP_016144165.1
• Uniprot ID: -
• Organism: Acinetobacter lactucae strain OTEC-02
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3609916..3620776

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OTEC02_RS17105 (OTEC02_17105)	secG	3610522..3610851 (-)	330	WP_002115012.1	preprotein translocase subunit SecG	-
OTEC02_RS17110 (OTEC02_17110)	tpiA	3610864..3611658 (-)	795	WP_057104882.1	triose-phosphate isomerase	-
OTEC02_RS17115 (OTEC02_17115)	pilB	3611950..3613662 (+)	1713	WP_081175451.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OTEC02_RS17120 (OTEC02_17120)	pilC	3613690..3614916 (+)	1227	WP_016144166.1	type II secretion system F family protein	Machinery gene
OTEC02_RS19330 (OTEC02_17125)	pilD	3614916..3615776 (+)	861	WP_016144165.1	prepilin peptidase	Machinery gene
OTEC02_RS17130 (OTEC02_17130)	coaE	3615778..3616374 (+)	597	WP_081175453.1	dephospho-CoA kinase	-
OTEC02_RS17135 (OTEC02_17135)	-	3616371..3617285 (-)	915	WP_081175455.1	DMT family transporter	-
OTEC02_RS17140 (OTEC02_17140)	rlmB	3617321..3618070 (-)	750	WP_005079348.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
OTEC02_RS17145 (OTEC02_17145)	-	3618173..3618499 (-)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
OTEC02_RS17150 (OTEC02_17150)	-	3618576..3619886 (-)	1311	WP_081175457.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32280.70 Da
• Isoelectric Point: 6.8118

>NTDB_id=220117 OTEC02_RS19330 WP_016144165.1 3614916..3615776(+) (pilD) [Acinetobacter lactucae strain OTEC-02]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIEHEKLTLSKPASSCPECHQP
IRWYQNIPVISWLMLRGKCSHCQHPISIRYPAVELLTMLCSLVVVMVFGPTLQMLWGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=220117 OTEC02_RS19330 WP_016144165.1 3614916..3615776(+) (pilD) [Acinetobacter lactucae strain OTEC-02]
ATGCAAGAAATTATTGCTTATTTCATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTATTGAGCCTATGTATTGG
TAGTTTTTTGAATGTAGTAATTTATCGCACCCCAAGAATGATGGAGCAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA
ATCCTGAGCAACCCATCATTGAGCATGAAAAACTAACATTAAGTAAACCTGCTTCATCATGTCCAGAGTGCCATCAACCT
ATCCGTTGGTATCAAAATATTCCTGTCATAAGCTGGCTGATGTTAAGAGGGAAATGCAGTCATTGCCAGCATCCTATTAG
CATTCGTTATCCAGCGGTTGAACTACTCACTATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGCCCCACCCTACAAA
TGCTTTGGGGGCTAGTCCTGACTTGGGTTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTGCTCCCCGACCGT
TTTACCTTGCCTTTGGCTGCTCTCGGCTTAGGTATTAATACATTTAATATTTACACCTCGCCTAACTCAGCCATTTGGGG
ATATTTAATCGGCTTTTTATGCCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCCGCATTGGGCGCGTGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTAGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	96.503	100	0.965
pilD	Acinetobacter baumannii D1279779	95.455	100	0.955
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Vibrio campbellii strain DS40M4	52.03	94.755	0.493
pilD	Neisseria gonorrhoeae MS11	46.947	91.608	0.43