Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BUM88_RS01570 Genome accession   NZ_CP020000
Coordinates   322711..323937 (-) Length   408 a.a.
NCBI ID   WP_004640845.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain CA16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 317711..328937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUM88_RS01540 (BUM88_01540) - 317741..319051 (+) 1311 WP_080026204.1 tetratricopeptide repeat protein -
  BUM88_RS01545 (BUM88_01545) - 319128..319454 (+) 327 WP_003654567.1 pyrimidine/purine nucleoside phosphorylase -
  BUM88_RS01550 (BUM88_01550) rlmB 319557..320306 (+) 750 WP_005037200.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  BUM88_RS01555 (BUM88_01555) - 320342..321256 (+) 915 WP_004640840.1 DMT family transporter -
  BUM88_RS01560 (BUM88_01560) coaE 321253..321849 (-) 597 WP_004640841.1 dephospho-CoA kinase -
  BUM88_RS20340 (BUM88_01565) pilD 321851..322711 (-) 861 WP_080026205.1 prepilin peptidase Machinery gene
  BUM88_RS01570 (BUM88_01570) pilC 322711..323937 (-) 1227 WP_004640845.1 type II secretion system F family protein Machinery gene
  BUM88_RS01575 (BUM88_01575) pilB 323964..325676 (-) 1713 WP_080026206.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BUM88_RS01580 (BUM88_01580) tpiA 325968..326762 (+) 795 WP_003654580.1 triose-phosphate isomerase -
  BUM88_RS01585 (BUM88_01585) secG 326775..327104 (+) 330 WP_005037186.1 preprotein translocase subunit SecG -
  BUM88_RS01605 (BUM88_01605) rimP 327745..328269 (+) 525 WP_005037183.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45040.54 Da        Isoelectric Point: 9.9566

>NTDB_id=219713 BUM88_RS01570 WP_004640845.1 322711..323937(-) (pilC) [Acinetobacter calcoaceticus strain CA16]
MTVKKAQLMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDKLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAIIA
AFMEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=219713 BUM88_RS01570 WP_004640845.1 322711..323937(-) (pilC) [Acinetobacter calcoaceticus strain CA16]
ATGACTGTCAAAAAGGCACAATTGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGAGA
ACTTCCGGCTAAAAATATGGCTTTAGCCAAAGTCACCCTACGCAAACAAGGGGTAACTGTCCGTAATATTCGGGAAAAGC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTATCAACGCTCGATATCACGATTTTTACCCGACAACTTGCAACC
ATGATGAAAGCTGGCGTGCCACTGGTACAAGGCTTTGAAATTGTGGCGGAAGGTTTAGAAAATCCAGCGATGCGCGAGGT
GGTACTCGGTATTAAAGGCGAAGTTGAAGGTGGTAGTACTTTTGCATCAGCTTTAAGAAAGTATCCTCAGCACTTCGACA
AACTATTTTGTTCTCTTGTAGAGTCTGGCGAACAATCTGGTGCGCTTGAAACCATGCTGGATCGTGTGGCAATTTACAAA
GAAAAAAGTGAATTGCTCAAGCAGAAAATCAAGAAAGCCATGAAATACCCGGCAACGGTTATTGTAGTTGCTGTGGTTGT
TACCATTATTTTGATGGTTAAAGTAGTTCCTGTCTTCCAAGACCTGTTTTCTTCCTTTGGCGCAGATTTGCCTGCGTTTA
CACAAATGGTCGTAAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGTGATTGGTGCAATTATTGCT
GCTTTTATGGAAGCTAAAAAGCGCAGTAAAAAATTCCGTGATGGTTTAGACAAACTCACGCTTAAGTTGCCTATCTTTGG
TGATCTTGTTTACAAGGCGATTATTGCCCGCTACAGCCGTACTTTAGCAACCACTTTTGCAGCAGGTGTTCCGCTCATTG
ATGCGCTTGAATCAACAGCAGGTGCAACCAATAATGTTATTTATGAACAAGCTGTAATGAAAATTCGTGAAGATGTTGCA
ACAGGTCAACAACTCCAATTTGCGATGCGCGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACCTACTATGAAAATGAAGTTGATAATGCCGTTGATGGCT
TAACTTCAATGATGGAACCTTTAATTATGGCAATTTTAGGGGTACTCGTAGGCGGTCTAGTGATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTCGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.059

100

0.971
  pilC Acinetobacter baylyi ADP1

85.539

100

0.855
  pilC Pseudomonas stutzeri DSM 10701

60.453

97.304

0.588
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria gonorrhoeae MS11

45.98

97.549

0.449
  pilG Neisseria meningitidis 44/76-A

45.98

97.549

0.449
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.587

100

0.407
  pilC Thermus thermophilus HB27

36.908

98.284

0.363

Multiple sequence alignment