Detailed information NTG0219746

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BUM88_RS20340
• Genome accession: NZ_CP020000
• Coordinates: 321851..322711 (-)
• Length: 286 a.a.
• NCBI ID: WP_080026205.1
• Uniprot ID: -
• Organism: Acinetobacter calcoaceticus strain CA16
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 316851..327711

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BUM88_RS01540 (BUM88_01540)	-	317741..319051 (+)	1311	WP_080026204.1	tetratricopeptide repeat protein	-
BUM88_RS01545 (BUM88_01545)	-	319128..319454 (+)	327	WP_003654567.1	pyrimidine/purine nucleoside phosphorylase	-
BUM88_RS01550 (BUM88_01550)	rlmB	319557..320306 (+)	750	WP_005037200.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
BUM88_RS01555 (BUM88_01555)	-	320342..321256 (+)	915	WP_004640840.1	DMT family transporter	-
BUM88_RS01560 (BUM88_01560)	coaE	321253..321849 (-)	597	WP_004640841.1	dephospho-CoA kinase	-
BUM88_RS20340 (BUM88_01565)	pilD	321851..322711 (-)	861	WP_080026205.1	prepilin peptidase	Machinery gene
BUM88_RS01570 (BUM88_01570)	pilC	322711..323937 (-)	1227	WP_004640845.1	type II secretion system F family protein	Machinery gene
BUM88_RS01575 (BUM88_01575)	pilB	323964..325676 (-)	1713	WP_080026206.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BUM88_RS01580 (BUM88_01580)	tpiA	325968..326762 (+)	795	WP_003654580.1	triose-phosphate isomerase	-
BUM88_RS01585 (BUM88_01585)	secG	326775..327104 (+)	330	WP_005037186.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32070.51 Da
• Isoelectric Point: 6.9121

>NTDB_id=219746 BUM88_RS20340 WP_080026205.1 321851..322711(-) (pilD) [Acinetobacter calcoaceticus strain CA16]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEHPIIDHEKLTLSKPASSCPQCHQP
IRWYQNIPVISWLVLKGKCGHCEHAISMRYPAIELLTMACSLVVIMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFSIYTTPTSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=219746 BUM88_RS20340 WP_080026205.1 321851..322711(-) (pilD) [Acinetobacter calcoaceticus strain CA16]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTTGCACTATTGAGCCTGTGTATTGG
TAGCTTTTTGAATGTGGTGATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAAGAATGTCAAATGTTACTCA
ATCCTGAACACCCCATTATTGACCATGAAAAGCTAACATTAAGTAAGCCCGCTTCATCATGCCCCCAATGTCACCAGCCC
ATTCGCTGGTATCAAAATATTCCTGTCATAAGTTGGTTGGTTTTAAAAGGTAAATGTGGGCATTGTGAGCATGCAATTAG
CATGCGCTACCCAGCCATCGAACTATTAACAATGGCATGTTCACTGGTTGTGATCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTAGTCCTGACTTGGGTTTTAATTGCTTTAACATTTATTGATTTTGATACTCAGCTGCTACCCGACCGT
TTTACCTTACCTTTGGCCGCACTGGGTTTAGGCATTAATACCTTTAGCATCTACACCACACCCACTTCAGCTATTTGGGG
TTACTTAATTGGTTTTTTATGCCTGTGGATTGTGTATTACCTATTTAAAGTAATTACTGGCAAAGAAGGCATGGGCTACG
GCGACTTTAAATTGCTTGCCGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTAGGTGCAATTATTGGCATCATTTTACTAAAATTACGCAATGACAATCAGCCCTTTGCCTTTGGGCCGTATATTGCCAT
TGCAGGCTGGGTTGCCTTTTTATGGGGTGACCAGATTATGAAAATCTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	94.755	100	0.948
pilD	Acinetobacter baumannii D1279779	94.406	100	0.944
pilD	Vibrio campbellii strain DS40M4	52.92	95.804	0.507
pilD	Vibrio cholerae strain A1552	52.747	95.455	0.503
pilD	Neisseria gonorrhoeae MS11	46.97	92.308	0.434