Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   A9237_RS09980 Genome accession   NZ_CP019959
Coordinates   2185732..2187480 (+) Length   582 a.a.
NCBI ID   WP_039988233.1    Uniprot ID   -
Organism   Vibrio owensii strain XSBZ03     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2180732..2192480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9237_RS09960 (A9237_09960) pilM 2183028..2184044 (+) 1017 WP_045412016.1 type IV pilus biogenesis protein PilM Machinery gene
  A9237_RS09965 (A9237_09965) pilN 2184028..2184606 (+) 579 WP_078608107.1 PilN domain-containing protein Machinery gene
  A9237_RS09970 (A9237_09970) pilO 2184599..2185192 (+) 594 WP_078608108.1 type 4a pilus biogenesis protein PilO Machinery gene
  A9237_RS09975 (A9237_09975) pilP 2185182..2185697 (+) 516 WP_078608109.1 pilus assembly protein PilP Machinery gene
  A9237_RS09980 (A9237_09980) pilQ 2185732..2187480 (+) 1749 WP_039988233.1 type IV pilus secretin PilQ Machinery gene
  A9237_RS09985 (A9237_09985) aroK 2187670..2188188 (+) 519 WP_005438434.1 shikimate kinase AroK -
  A9237_RS09990 (A9237_09990) aroB 2188220..2189320 (+) 1101 WP_005438436.1 3-dehydroquinate synthase -
  A9237_RS09995 (A9237_09995) - 2189374..2190867 (+) 1494 WP_078608110.1 SPOR domain-containing protein -
  A9237_RS10000 (A9237_10000) - 2190937..2191776 (+) 840 WP_020196767.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 63891.99 Da        Isoelectric Point: 4.5148

>NTDB_id=219196 A9237_RS09980 WP_039988233.1 2185732..2187480(+) (pilQ) [Vibrio owensii strain XSBZ03]
MKMRQGLTLTPRKLAGIFSLWFFLLLAPFVAAQEVKSNSLKTIDFRTNKDKDAVIVVELASPAAIVDIKRVQEGLSIDLL
NTSVKDDQLYLLDVKDFSTVVESIEIFRETSTTRLVAYIDEEYTHDYRLTGRYLEIKVGKIKANEKAPDKSILEKEGKLI
SINFQDIPVRNVLQLIADYNQFNLVVSDSVEGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKDELDLREKQQ
LEKQKLEQEMGELSSEIIKVNFAKASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIEVIREIIESLDIPVK
QVQIEARIVTINEGNMDELGVRWGFTSINGSHTVGGSIENNLATIGLYDGGGDGEGEDGGSSVGIDDFLNVNLAATSPNA
TSLAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVTFKKAVLSLKVTPQ
ITPDNRLVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFR
RSYENVGKSELLIFVTPKVVIQ

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=219196 A9237_RS09980 WP_039988233.1 2185732..2187480(+) (pilQ) [Vibrio owensii strain XSBZ03]
ATGAAAATGAGACAAGGATTAACACTGACACCAAGGAAGCTAGCAGGGATCTTCTCTTTGTGGTTCTTTTTACTTTTAGC
CCCTTTTGTAGCAGCACAGGAAGTAAAGTCTAACTCGCTAAAGACCATCGACTTTCGTACAAACAAAGACAAAGATGCCG
TGATTGTTGTAGAACTTGCGTCCCCTGCTGCAATCGTTGATATCAAGCGCGTACAGGAAGGCTTGAGTATCGACTTACTC
AACACATCTGTAAAAGACGACCAGCTTTACCTTCTGGATGTAAAAGACTTTTCTACGGTCGTCGAGAGTATTGAAATATT
TCGAGAGACCTCAACTACACGTTTAGTTGCTTATATTGATGAGGAATACACTCACGATTACCGTCTGACTGGGCGTTACC
TAGAGATCAAAGTTGGTAAGATAAAAGCCAACGAAAAAGCACCGGATAAGAGCATTCTAGAAAAAGAAGGGAAGCTGATT
TCAATTAACTTCCAAGACATCCCAGTGCGAAACGTATTGCAACTCATCGCCGACTACAACCAATTTAACTTAGTGGTATC
CGACTCCGTTGAAGGCAACTTAACTTTGCGTCTTGATGGTGTACCTTGGCAGCAAGTGCTCGATATCATTCTTCAAGTAA
AAGGCTTGGATAAGCGTGTTGATGGCAACGTGATTTTGGTGGCGCCGAAAGACGAACTGGATTTGCGTGAAAAGCAACAA
TTAGAGAAACAGAAACTTGAGCAGGAGATGGGGGAGCTTTCTTCTGAGATCATCAAAGTTAACTTTGCTAAAGCGTCGGA
CATTGCCGAGATGATTAATGGCGAGGGCAATATCAGTATGCTCTCAGAACGTGGCAGCATGACCATTGATGAGCGGACGA
ACTCACTCTTAATTAGAGAGCTACCAGAGAACATTGAGGTTATCCGAGAGATCATCGAGTCTTTGGATATTCCGGTCAAA
CAAGTTCAGATTGAAGCACGAATCGTCACCATCAATGAAGGTAATATGGACGAACTTGGTGTGCGCTGGGGTTTTACCTC
TATCAACGGCAGCCACACCGTCGGTGGTTCGATTGAGAATAACCTTGCGACAATCGGCCTTTACGATGGCGGCGGTGATG
GCGAAGGTGAAGATGGTGGCAGCAGTGTTGGTATTGATGACTTCCTAAACGTGAACTTGGCTGCAACCAGCCCGAATGCG
ACCAGTCTTGCTTTCCAAGTTGCGAAGTTAGGCTCAGACACACTGCTTGATTTAGAGCTTTCTGCGCTGCAACAAGAATC
CAAGGCAGAGATTATTTCGAGCCCGCGATTGATTACCACTAACAAGAAGCCTGCTTATATCGAGCAAGGTACCGAAATCC
CGTACCTTGAGTCTTCTTCCAGTGGCGCAACGTCTGTCACGTTCAAAAAAGCCGTATTGAGCTTAAAAGTGACACCACAG
ATTACCCCTGACAATCGTTTAGTGTTGGATTTGAGCGTTACGCAAGATAGACCGGGTCAAGTTGTAAAAACAGGCACTGG
TGAAGCGGTCGCGATCGATACTCAACGCATTGGCACACAAGTTTTAGTCAATAACGGTGAAACGGTTGTGTTGGGTGGTA
TTTTTCAACATAGCATCACAAACTCCGTCGATAAGGTGCCTTTATTAGGTGATTTACCGCTGTTAGGGGCACTTTTTCGT
CGAAGTTATGAAAATGTCGGCAAAAGTGAACTGTTGATTTTTGTCACGCCTAAAGTTGTGATTCAGTAG

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(422-580)

Bacterial type II/III secretion system short domain (Secretin_N)

(256-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

95.704

100

0.957
  pilQ Vibrio cholerae strain A1552

76.761

97.595

0.749
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

76.761

97.595

0.749
  pilQ Pseudomonas aeruginosa PAK

40.522

98.797

0.4
  pilQ Legionella pneumophila strain ERS1305867

41.176

96.392

0.397
  pilQ Legionella pneumophila strain Lp02

41.176

96.392

0.397
  pilQ Acinetobacter baumannii D1279779

36.851

100

0.378
  pilQ Acinetobacter baumannii strain A118

36.851

100

0.378
  comQ Acinetobacter baylyi ADP1

37.005

99.828

0.369

Multiple sequence alignment