Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   A9237_RS09960 Genome accession   NZ_CP019959
Coordinates   2183028..2184044 (+) Length   338 a.a.
NCBI ID   WP_045412016.1    Uniprot ID   -
Organism   Vibrio owensii strain XSBZ03     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2178028..2189044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9237_RS09945 (A9237_09945) - 2178400..2179128 (-) 729 WP_005438421.1 redoxin family protein -
  A9237_RS09950 (A9237_09950) oxyR 2179304..2180212 (+) 909 WP_033005806.1 DNA-binding transcriptional regulator OxyR -
  A9237_RS09955 (A9237_09955) - 2180279..2182849 (-) 2571 WP_041061315.1 penicillin-binding protein 1A -
  A9237_RS09960 (A9237_09960) pilM 2183028..2184044 (+) 1017 WP_045412016.1 type IV pilus biogenesis protein PilM Machinery gene
  A9237_RS09965 (A9237_09965) pilN 2184028..2184606 (+) 579 WP_078608107.1 PilN domain-containing protein Machinery gene
  A9237_RS09970 (A9237_09970) pilO 2184599..2185192 (+) 594 WP_078608108.1 type 4a pilus biogenesis protein PilO Machinery gene
  A9237_RS09975 (A9237_09975) pilP 2185182..2185697 (+) 516 WP_078608109.1 pilus assembly protein PilP Machinery gene
  A9237_RS09980 (A9237_09980) pilQ 2185732..2187480 (+) 1749 WP_039988233.1 type IV pilus secretin PilQ Machinery gene
  A9237_RS09985 (A9237_09985) aroK 2187670..2188188 (+) 519 WP_005438434.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 38002.31 Da        Isoelectric Point: 6.0152

>NTDB_id=219192 A9237_RS09960 WP_045412016.1 2183028..2184044(+) (pilM) [Vibrio owensii strain XSBZ03]
MDKLLVTGIDIGHNSLKAVVLKPNGNSYALLGYKEIILKERIVAENNTINHQEIVKTLKEMRKELPIRARKVAISVPDNA
VISKKLQIEQNLEESEKEFAVMQAFAHQSPFPVEELSLDFVKVDTDEQMGGTESYQVFATRREVVESRVETLTKSGLKTV
LVDVHSQSLGHIWKLTAERFPEKNKHCLLDIGAMSSSFTMFTEQGELFHKEFPCGTRTTNDLSQHDPLSDDIQTATEEFN
RQMVERVKRQMQLYTSFNGSQDIKGIWLSGEGAATPMLAEELSSQLALECELLNPLSLFEMKVSKRKRRAADWQHFTAAA
GLAVRGIQWLGGDDAASH

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=219192 A9237_RS09960 WP_045412016.1 2183028..2184044(+) (pilM) [Vibrio owensii strain XSBZ03]
ATGGATAAGCTATTAGTTACGGGCATAGATATTGGCCATAACAGCCTCAAAGCCGTGGTACTTAAACCCAATGGCAACAG
TTACGCTTTATTGGGTTACAAAGAAATAATACTTAAGGAACGTATTGTCGCTGAAAATAACACCATAAATCATCAAGAAA
TTGTAAAGACCCTTAAAGAGATGAGAAAAGAGCTCCCAATTCGAGCTAGAAAGGTCGCAATTTCGGTTCCAGACAATGCC
GTGATCAGCAAAAAGCTACAAATAGAGCAGAACCTAGAAGAAAGCGAAAAGGAATTTGCGGTGATGCAAGCCTTTGCGCA
TCAGTCTCCCTTTCCGGTTGAAGAGCTCAGCCTCGACTTTGTAAAGGTTGATACGGATGAGCAGATGGGCGGCACAGAGA
GCTACCAAGTGTTTGCAACACGCAGAGAGGTGGTGGAAAGCCGAGTGGAGACATTAACAAAGTCTGGCCTAAAAACCGTG
CTGGTGGATGTGCACTCACAAAGTCTTGGTCATATATGGAAGCTAACCGCAGAACGTTTTCCAGAAAAGAATAAGCATTG
CTTGTTGGACATTGGTGCGATGAGCAGCTCTTTCACTATGTTTACCGAGCAAGGAGAGTTATTCCATAAGGAGTTTCCTT
GCGGTACCCGCACAACAAACGATTTGTCTCAACACGATCCACTCAGTGACGATATTCAAACCGCAACTGAAGAGTTCAAT
CGACAAATGGTTGAACGTGTTAAGCGTCAGATGCAGCTCTACACCTCGTTCAATGGTAGCCAAGATATCAAAGGCATTTG
GCTTTCCGGAGAGGGGGCGGCTACGCCAATGTTAGCTGAGGAACTATCAAGTCAATTGGCACTAGAGTGTGAACTTCTCA
ATCCTCTTAGTTTGTTTGAAATGAAAGTCTCTAAACGTAAACGCCGAGCTGCAGATTGGCAGCATTTCACGGCAGCTGCA
GGTTTAGCGGTACGCGGTATTCAGTGGTTGGGAGGTGACGATGCTGCATCACATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio campbellii strain DS40M4

89.053

100

0.891
  pilM Vibrio cholerae strain A1552

47.989

100

0.494

Multiple sequence alignment