Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | A9237_RS09965 | Genome accession | NZ_CP019959 |
| Coordinates | 2184028..2184606 (+) | Length | 192 a.a. |
| NCBI ID | WP_078608107.1 | Uniprot ID | - |
| Organism | Vibrio owensii strain XSBZ03 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2179028..2189606
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A9237_RS09950 (A9237_09950) | oxyR | 2179304..2180212 (+) | 909 | WP_033005806.1 | DNA-binding transcriptional regulator OxyR | - |
| A9237_RS09955 (A9237_09955) | - | 2180279..2182849 (-) | 2571 | WP_041061315.1 | penicillin-binding protein 1A | - |
| A9237_RS09960 (A9237_09960) | pilM | 2183028..2184044 (+) | 1017 | WP_045412016.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| A9237_RS09965 (A9237_09965) | pilN | 2184028..2184606 (+) | 579 | WP_078608107.1 | PilN domain-containing protein | Machinery gene |
| A9237_RS09970 (A9237_09970) | pilO | 2184599..2185192 (+) | 594 | WP_078608108.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| A9237_RS09975 (A9237_09975) | pilP | 2185182..2185697 (+) | 516 | WP_078608109.1 | pilus assembly protein PilP | Machinery gene |
| A9237_RS09980 (A9237_09980) | pilQ | 2185732..2187480 (+) | 1749 | WP_039988233.1 | type IV pilus secretin PilQ | Machinery gene |
| A9237_RS09985 (A9237_09985) | aroK | 2187670..2188188 (+) | 519 | WP_005438434.1 | shikimate kinase AroK | - |
| A9237_RS09990 (A9237_09990) | aroB | 2188220..2189320 (+) | 1101 | WP_005438436.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 192 a.a. Molecular weight: 22259.69 Da Isoelectric Point: 9.4720
>NTDB_id=219193 A9237_RS09965 WP_078608107.1 2184028..2184606(+) (pilN) [Vibrio owensii strain XSBZ03]
MLHHINLLAWRENQREEHRRRFIGLIVLGAIVALGVQWGIGKYYQYQQDQQQQRLDYLAHYISQLDKRIEAMKIAEQEHG
KILERLKIVEGLQNGRNKTTEFMNLMPSVIPEGVYVDKIKMNDYEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFKGASIKEGGKQHG
MLHHINLLAWRENQREEHRRRFIGLIVLGAIVALGVQWGIGKYYQYQQDQQQQRLDYLAHYISQLDKRIEAMKIAEQEHG
KILERLKIVEGLQNGRNKTTEFMNLMPSVIPEGVYVDKIKMNDYEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFKGASIKEGGKQHG
Nucleotide
Download Length: 579 bp
>NTDB_id=219193 A9237_RS09965 WP_078608107.1 2184028..2184606(+) (pilN) [Vibrio owensii strain XSBZ03]
ATGCTGCATCACATTAACCTCCTCGCTTGGCGCGAAAATCAACGTGAAGAACATCGTCGACGTTTTATTGGTTTGATTGT
TCTTGGTGCGATTGTTGCGTTGGGCGTGCAGTGGGGTATCGGTAAGTACTACCAATACCAACAAGACCAGCAACAACAGC
GTCTAGACTATTTAGCTCACTATATATCTCAGCTTGATAAGCGAATTGAAGCAATGAAGATTGCTGAGCAAGAGCACGGC
AAGATCTTAGAGCGTTTAAAGATCGTCGAAGGGTTACAAAACGGACGCAATAAAACCACTGAGTTTATGAACTTGATGCC
ATCAGTGATCCCTGAAGGCGTGTATGTCGACAAGATTAAGATGAATGACTACGAAATCGAGATCTCAGGAATTTCAGACA
GTACGCCGCGTCTCGCGACAATGCTCGACAACATGGAGCGTTCGGCAAAATTGTTAGATGTCGAGATGCACTCCATTGTC
CATGGAAAAGCGCGTTTCGGTAAAGAGTTTCAGACGTTCAAAGTCTCCTTCATGTTTAAAGGTGCCTCTATAAAAGAAGG
AGGTAAACAGCATGGTTAA
ATGCTGCATCACATTAACCTCCTCGCTTGGCGCGAAAATCAACGTGAAGAACATCGTCGACGTTTTATTGGTTTGATTGT
TCTTGGTGCGATTGTTGCGTTGGGCGTGCAGTGGGGTATCGGTAAGTACTACCAATACCAACAAGACCAGCAACAACAGC
GTCTAGACTATTTAGCTCACTATATATCTCAGCTTGATAAGCGAATTGAAGCAATGAAGATTGCTGAGCAAGAGCACGGC
AAGATCTTAGAGCGTTTAAAGATCGTCGAAGGGTTACAAAACGGACGCAATAAAACCACTGAGTTTATGAACTTGATGCC
ATCAGTGATCCCTGAAGGCGTGTATGTCGACAAGATTAAGATGAATGACTACGAAATCGAGATCTCAGGAATTTCAGACA
GTACGCCGCGTCTCGCGACAATGCTCGACAACATGGAGCGTTCGGCAAAATTGTTAGATGTCGAGATGCACTCCATTGTC
CATGGAAAAGCGCGTTTCGGTAAAGAGTTTCAGACGTTCAAAGTCTCCTTCATGTTTAAAGGTGCCTCTATAAAAGAAGG
AGGTAAACAGCATGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
94.792 |
100 |
0.948 |
| pilN | Vibrio cholerae strain A1552 |
58.854 |
100 |
0.589 |