Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   B2D37_RS13595 Genome accession   NZ_CP019947
Coordinates   2978340..2979560 (+) Length   406 a.a.
NCBI ID   WP_079203187.1    Uniprot ID   -
Organism   Pseudomonas sp. CC6-YY-74     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2973340..2984560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B2D37_RS13575 - 2973789..2974628 (-) 840 WP_079203184.1 hypothetical protein -
  B2D37_RS13580 - 2974630..2975439 (-) 810 WP_256573079.1 ABC transporter permease subunit -
  B2D37_RS23120 - 2975742..2976200 (-) 459 WP_154067090.1 hypothetical protein -
  B2D37_RS23985 pilA 2976215..2976400 (-) 186 WP_079203185.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  B2D37_RS13590 pilB 2976633..2978336 (+) 1704 WP_079203186.1 type IV-A pilus assembly ATPase PilB Machinery gene
  B2D37_RS13595 pilC 2978340..2979560 (+) 1221 WP_079203187.1 type II secretion system F family protein Machinery gene
  B2D37_RS13600 pilD 2979564..2980433 (+) 870 WP_154067091.1 A24 family peptidase Machinery gene
  B2D37_RS13605 coaE 2981993..2982601 (+) 609 WP_079203188.1 dephospho-CoA kinase -
  B2D37_RS13610 yacG 2982598..2982804 (+) 207 WP_079203189.1 DNA gyrase inhibitor YacG -
  B2D37_RS13615 - 2982887..2983102 (-) 216 WP_079203190.1 hypothetical protein -
  B2D37_RS13620 - 2983261..2983950 (-) 690 WP_079203191.1 energy-coupling factor ABC transporter permease -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44478.45 Da        Isoelectric Point: 9.8100

>NTDB_id=219084 B2D37_RS13595 WP_079203187.1 2978340..2979560(+) (pilC) [Pseudomonas sp. CC6-YY-74]
MAAKALATSVFVWEGTDKKGGKMKGELIGQSPALIKAQLRKQGINPLKVRKKPMSLFSAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFENPNMRKLIDEVKQEVAAGNSFAASLRKKPLYFDDLYCNLVDAGEQSGALETLLDRVATYKEKT
EALKAKIKKAMTYPISVIVVAVIVTAILLIKVVPQFESVFAGFGAELPAFTQVVVNMSRGLQEWWFMFIFGIFAIAFSFK
WVFKRSEKFRDFLDRTLLKAPIIGDIMYKAVVARYARTLATTFAAGVPLVEALDSVAGATGNVVFRNAVHKIRNDVSSGT
QLNFSMRSTGIFPSMAIQMTAIGEESGSLDEMLEKVAGYYEDEVDNAVDNLTTLMEPMIMSVIGVLVGGLIIAMYLPIFQ
LGAVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=219084 B2D37_RS13595 WP_079203187.1 2978340..2979560(+) (pilC) [Pseudomonas sp. CC6-YY-74]
ATGGCGGCCAAAGCACTAGCAACCAGCGTTTTCGTCTGGGAAGGCACCGACAAGAAAGGCGGCAAGATGAAGGGCGAATT
GATCGGGCAGTCACCTGCCCTGATCAAGGCGCAGCTGCGCAAGCAGGGCATCAACCCGCTCAAGGTGCGCAAGAAGCCGA
TGTCGCTGTTCAGCGCCGGCAAGAAGATCAAGCCGATGGATATCGCCCTGTTCACCCGGCAGATGGCCACCATGATGAAG
GCCGGGGTGCCGTTGCTGCAGTCGTTCGACATCATCGGCGAGGGTTTTGAAAACCCGAATATGCGCAAGCTGATTGACGA
GGTTAAGCAGGAGGTTGCTGCGGGTAACAGCTTCGCCGCCTCGCTGCGCAAGAAGCCGCTGTACTTCGATGACCTGTATT
GCAACCTGGTTGACGCCGGCGAACAGTCCGGCGCACTGGAAACCCTGCTCGACCGAGTCGCCACCTACAAGGAAAAAACC
GAAGCGCTGAAGGCCAAGATCAAGAAGGCCATGACTTACCCGATCTCGGTGATCGTGGTGGCGGTGATCGTCACGGCGAT
TCTGCTGATCAAGGTGGTACCACAATTCGAGAGCGTGTTCGCCGGCTTCGGCGCCGAACTGCCGGCGTTCACCCAGGTGG
TGGTGAACATGTCGCGCGGGCTGCAGGAATGGTGGTTCATGTTTATTTTCGGCATATTCGCCATCGCCTTCTCGTTTAAA
TGGGTCTTCAAACGCTCGGAAAAATTCCGCGACTTCCTCGACCGCACCCTGCTCAAGGCGCCGATTATTGGCGACATAAT
GTACAAGGCGGTGGTCGCGCGTTACGCGCGGACGCTGGCGACCACCTTCGCCGCCGGGGTGCCGCTGGTCGAGGCGCTCG
ACTCGGTGGCCGGGGCAACCGGCAACGTGGTGTTCCGCAATGCCGTGCACAAGATCCGCAATGATGTGTCATCCGGTACC
CAGCTGAACTTCTCGATGCGCAGCACCGGGATCTTCCCGAGCATGGCCATTCAGATGACCGCCATCGGCGAGGAGTCCGG
CTCGCTGGACGAGATGCTGGAGAAGGTCGCCGGTTATTACGAGGACGAGGTGGACAACGCCGTCGACAACCTGACCACGC
TGATGGAGCCGATGATCATGTCGGTTATCGGCGTGCTGGTCGGCGGCTTGATCATTGCCATGTACCTGCCGATCTTCCAG
CTGGGCGCGGTGGTTGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

78.272

99.754

0.781
  pilC Acinetobacter baylyi ADP1

61.576

100

0.616
  pilC Acinetobacter baumannii D1279779

61.386

99.507

0.611
  pilC Legionella pneumophila strain ERS1305867

54.545

97.537

0.532
  pilG Neisseria gonorrhoeae MS11

46.348

97.783

0.453
  pilG Neisseria meningitidis 44/76-A

46.096

97.783

0.451
  pilC Vibrio cholerae strain A1552

41.379

100

0.414
  pilC Vibrio campbellii strain DS40M4

40.05

97.783

0.392

Multiple sequence alignment