Detailed information NTG0219085

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: B2D37_RS13600
• Genome accession: NZ_CP019947
• Coordinates: 2979564..2980433 (+)
• Length: 289 a.a.
• NCBI ID: WP_154067091.1
• Uniprot ID: -
• Organism: Pseudomonas sp. CC6-YY-74
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2974564..2985433

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B2D37_RS13580	-	2974630..2975439 (-)	810	WP_256573079.1	ABC transporter permease subunit	-
B2D37_RS23120	-	2975742..2976200 (-)	459	WP_154067090.1	hypothetical protein	-
B2D37_RS23985	pilA	2976215..2976400 (-)	186	WP_079203185.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
B2D37_RS13590	pilB	2976633..2978336 (+)	1704	WP_079203186.1	type IV-A pilus assembly ATPase PilB	Machinery gene
B2D37_RS13595	pilC	2978340..2979560 (+)	1221	WP_079203187.1	type II secretion system F family protein	Machinery gene
B2D37_RS13600	pilD	2979564..2980433 (+)	870	WP_154067091.1	A24 family peptidase	Machinery gene
B2D37_RS13605	coaE	2981993..2982601 (+)	609	WP_079203188.1	dephospho-CoA kinase	-
B2D37_RS13610	yacG	2982598..2982804 (+)	207	WP_079203189.1	DNA gyrase inhibitor YacG	-
B2D37_RS13615	-	2982887..2983102 (-)	216	WP_079203190.1	hypothetical protein	-
B2D37_RS13620	-	2983261..2983950 (-)	690	WP_079203191.1	energy-coupling factor ABC transporter permease	-
B2D37_RS13625	-	2984563..2985192 (+)	630	WP_079203192.1	DUF1780 domain-containing protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31827.87 Da
• Isoelectric Point: 6.0743

>NTDB_id=219085 B2D37_RS13600 WP_154067091.1 2979564..2980433(+) (pilD) [Pseudomonas sp. CC6-YY-74]
MALDFLAGDLPAFTLACLVLGLLIGSFLNVLVYRLPVMMQRDWQAQAREILELPALPDAPLFNLILPNSRCPHCSHEIRP
WENIPLISYLFLRGKCSSCKAPISLRYPLVELACGLLSAYVAWHFGFTWQTAGILLLTWGLLAMSLIDADHQLLPDALVL
PLLWLGLIANYFGVFTSLEAALWGAIGGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVGA
VLGLLMLRLRNAETSTPIPFGPYLAIAGWIALLWGEQITGTYLQFAGFG

Nucleotide

• Length: 870 bp

>NTDB_id=219085 B2D37_RS13600 WP_154067091.1 2979564..2980433(+) (pilD) [Pseudomonas sp. CC6-YY-74]
ATGGCTCTAGATTTTTTGGCCGGCGACTTGCCGGCCTTTACATTGGCCTGCCTGGTGCTGGGGCTGTTGATTGGCAGCTT
TCTCAATGTGCTGGTGTACCGCCTGCCGGTGATGATGCAACGCGACTGGCAGGCCCAGGCCCGGGAAATCCTTGAGCTGC
CGGCGCTGCCGGACGCGCCGCTGTTCAATTTAATTTTGCCCAACTCGCGCTGCCCGCACTGCAGCCACGAGATTCGCCCC
TGGGAGAATATCCCGCTAATCAGCTACCTGTTCCTGCGCGGTAAATGCTCCAGCTGCAAGGCGCCAATCAGCCTGCGCTA
CCCGCTGGTGGAACTGGCCTGCGGGCTGCTTTCGGCGTATGTGGCCTGGCACTTCGGCTTTACCTGGCAGACCGCCGGCA
TCCTGCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGACGCCGACCATCAACTGCTGCCGGACGCATTGGTGCTG
CCGTTGCTGTGGCTGGGGCTGATCGCCAACTATTTCGGCGTGTTCACCAGCCTGGAAGCCGCGCTGTGGGGCGCGATTGG
CGGCTACCTGAGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGCTATGGCGACTTCA
AGCTGCTGGCCATGCTCGGCGCCTGGGGCGGCTGGCAAGTGCTACCGCTGACCATCCTGCTGTCGTCGCTGGTTGGCGCC
GTGCTCGGGCTGCTCATGCTGCGCCTGCGCAATGCCGAAACCAGCACACCGATCCCGTTCGGCCCCTACCTCGCCATCGC
CGGCTGGATCGCCCTGCTCTGGGGCGAGCAGATCACCGGGACCTACCTGCAGTTTGCCGGGTTCGGCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-125)

• Type IV leader peptidase family (Peptidase_A24) (136-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	52.669	97.232	0.512
pilD	Acinetobacter baumannii D1279779	52.313	97.232	0.509
pilD	Vibrio cholerae strain A1552	53.48	94.464	0.505
pilD	Vibrio campbellii strain DS40M4	51.282	94.464	0.484
pilD	Neisseria gonorrhoeae MS11	50.958	90.311	0.46