Detailed information
Bioinformatically predicted
Overview
| Name | comGA/cglA/cilD | Type | Machinery gene |
| Locus tag | SPSF3K_RS06765 | Genome accession | NZ_CP025420 |
| Coordinates | 1343313..1343717 (+) | Length | 134 a.a. |
| NCBI ID | WP_003108459.1 | Uniprot ID | A0ABP2SZR2 |
| Organism | Streptococcus parauberis strain SPOF3K | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1338313..1348717
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SPSF3K_RS06740 | - | 1338641..1338760 (-) | 120 | Protein_1330 | IS5/IS1182 family transposase | - |
| SPSF3K_RS06750 (SPSF3K_01372) | - | 1339964..1340860 (-) | 897 | WP_100190738.1 | IS5 family transposase | - |
| SPSF3K_RS06755 (SPSF3K_01373) | - | 1341047..1341409 (+) | 363 | WP_003108462.1 | MORN motif family protein | - |
| SPSF3K_RS06760 (SPSF3K_01374) | - | 1341406..1343250 (+) | 1845 | WP_003108460.1 | acyltransferase family protein | - |
| SPSF3K_RS06765 (SPSF3K_01375) | comGA/cglA/cilD | 1343313..1343717 (+) | 405 | WP_003108459.1 | ATPase, T2SS/T4P/T4SS family | Machinery gene |
| SPSF3K_RS06770 (SPSF3K_01376) | - | 1343783..1344781 (+) | 999 | WP_100190737.1 | IS5 family transposase | - |
| SPSF3K_RS06775 (SPSF3K_01377) | - | 1345639..1347771 (+) | 2133 | WP_177216636.1 | N-acetylmuramoyl-L-alanine amidase family protein | - |
Sequence
Protein
Download Length: 134 a.a. Molecular weight: 15297.77 Da Isoelectric Point: 10.3701
>NTDB_id=218973 SPSF3K_RS06765 WP_003108459.1 1343313..1343717(+) (comGA/cglA/cilD) [Streptococcus parauberis strain SPOF3K]
MIKEIAQRMLKKASDFGASDIYILPARTGFSVVFRKSAHREYDQLLSDAEGQSLISHFKFTAGMNVGEKRRPQLGSCLYE
LADRKCRLRLSSAGDFESRESLVIRILHDTKQPLKFWIEADLPQVKKLVARRGL
MIKEIAQRMLKKASDFGASDIYILPARTGFSVVFRKSAHREYDQLLSDAEGQSLISHFKFTAGMNVGEKRRPQLGSCLYE
LADRKCRLRLSSAGDFESRESLVIRILHDTKQPLKFWIEADLPQVKKLVARRGL
Nucleotide
Download Length: 405 bp
>NTDB_id=218973 SPSF3K_RS06765 WP_003108459.1 1343313..1343717(+) (comGA/cglA/cilD) [Streptococcus parauberis strain SPOF3K]
ATGATAAAGGAAATAGCGCAAAGGATGTTAAAGAAAGCAAGCGATTTTGGGGCAAGTGATATTTACATATTACCCGCCAG
AACAGGATTTTCGGTTGTTTTCAGAAAGTCAGCACATCGTGAATATGATCAGCTCCTGTCAGATGCTGAAGGTCAAAGTC
TCATTTCCCATTTCAAATTTACAGCAGGGATGAATGTAGGTGAGAAGCGCCGGCCACAACTAGGATCTTGCTTGTATGAG
CTTGCAGATAGAAAGTGTCGCTTGCGTCTATCCTCAGCGGGTGACTTTGAAAGTCGCGAAAGTTTGGTGATTCGAATTTT
GCATGACACGAAACAACCACTCAAGTTTTGGATTGAGGCAGATTTACCTCAGGTAAAAAAGTTAGTAGCTAGACGCGGTC
TTTAG
ATGATAAAGGAAATAGCGCAAAGGATGTTAAAGAAAGCAAGCGATTTTGGGGCAAGTGATATTTACATATTACCCGCCAG
AACAGGATTTTCGGTTGTTTTCAGAAAGTCAGCACATCGTGAATATGATCAGCTCCTGTCAGATGCTGAAGGTCAAAGTC
TCATTTCCCATTTCAAATTTACAGCAGGGATGAATGTAGGTGAGAAGCGCCGGCCACAACTAGGATCTTGCTTGTATGAG
CTTGCAGATAGAAAGTGTCGCTTGCGTCTATCCTCAGCGGGTGACTTTGAAAGTCGCGAAAGTTTGGTGATTCGAATTTT
GCATGACACGAAACAACCACTCAAGTTTTGGATTGAGGCAGATTTACCTCAGGTAAAAAAGTTAGTAGCTAGACGCGGTC
TTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA/cglA/cilD | Streptococcus mitis NCTC 12261 |
45.522 |
100 |
0.455 |
| comGA | Lactococcus lactis subsp. cremoris KW2 |
44.444 |
100 |
0.448 |
| comGA/cglA/cilD | Streptococcus pneumoniae D39 |
44.03 |
100 |
0.44 |
| comGA/cglA/cilD | Streptococcus pneumoniae Rx1 |
44.03 |
100 |
0.44 |
| comGA/cglA/cilD | Streptococcus pneumoniae R6 |
44.03 |
100 |
0.44 |
| comGA/cglA/cilD | Streptococcus pneumoniae TIGR4 |
44.03 |
100 |
0.44 |
| comGA | Streptococcus gordonii str. Challis substr. CH1 |
43.284 |
100 |
0.433 |
| comGA/cglA | Streptococcus sobrinus strain NIDR 6715-7 |
43.511 |
97.761 |
0.425 |
| comGA | Streptococcus mutans UA159 |
42.975 |
90.299 |
0.388 |
| comGA | Streptococcus mutans UA140 |
42.975 |
90.299 |
0.388 |