Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   B1781_RS18080 Genome accession   NZ_CP019936
Coordinates   3814139..3815518 (+) Length   459 a.a.
NCBI ID   WP_078120998.1    Uniprot ID   -
Organism   Thiosocius teredinicola strain PMS-2146H.STBD.0c.01a     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3809139..3820518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1781_RS18065 sucD 3810328..3811197 (-) 870 WP_078120995.1 succinate--CoA ligase subunit alpha -
  B1781_RS18070 sucC 3811216..3812376 (-) 1161 WP_078120996.1 ADP-forming succinate--CoA ligase subunit beta -
  B1781_RS18075 - 3812553..3814142 (+) 1590 WP_078120997.1 ATP-binding protein -
  B1781_RS18080 pilR 3814139..3815518 (+) 1380 WP_078120998.1 sigma-54 dependent transcriptional regulator Regulator
  B1781_RS23645 - 3815788..3815887 (+) 100 Protein_3590 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  B1781_RS18090 - 3816373..3816795 (+) 423 WP_078120999.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  B1781_RS18095 pilB 3816958..3818673 (+) 1716 WP_078121000.1 type IV-A pilus assembly ATPase PilB Machinery gene
  B1781_RS18100 pilC 3818686..3819933 (+) 1248 WP_078121001.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50152.26 Da        Isoelectric Point: 5.1683

>NTDB_id=218971 B1781_RS18080 WP_078120998.1 3814139..3815518(+) (pilR) [Thiosocius teredinicola strain PMS-2146H.STBD.0c.01a]
MTRPLALIIDDEPDIRELLEITLARMDVDCRLAGSLREAFGQLAETHFNLCLVDMRLPDGNGIDIVRKVAADHPETPIAM
ITAHGNMETAVEALKAGAFDFVSKPVDLPVLRRLVETALRLDGNDQAPASPKSHGDLLGKSPAMQEIRRLIEKLARNQAP
VFISGESGTGKELAARSIHSRSPRASRPFVAVNCGAIPQDLMESEFFGHVKGSFTGAVRDKPGLFQTADGGTLFLDEVAD
LPLSMQVKLLRAIQEKSVRPVGGEKEESVDVRIISASHKDLAAMVAGGEFRQDLYYRIHVIELIMAPLRERPEDIPVMIE
HILSRLAQRMGANPPKLERSALEALYRHDFPGNVRELENLLERATALCEQQTITLDDLGLANAPSGNGHATPPSPLADQG
LEGYLADVERQAIVQALETNKWNRTAAAKALGISFRALRYRLEKLGLDAEDDGTDAQGQ

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=218971 B1781_RS18080 WP_078120998.1 3814139..3815518(+) (pilR) [Thiosocius teredinicola strain PMS-2146H.STBD.0c.01a]
ATGACTCGCCCGCTCGCCCTCATCATCGACGACGAACCCGATATTCGTGAACTTCTTGAAATCACGCTGGCCCGCATGGA
TGTCGACTGTCGACTGGCCGGTTCGCTGCGCGAGGCCTTCGGACAACTCGCCGAAACACATTTCAATCTGTGTCTCGTCG
ATATGCGTCTGCCCGACGGCAACGGAATCGACATCGTGCGCAAGGTGGCCGCAGACCACCCCGAAACGCCGATCGCGATG
ATCACCGCGCACGGCAACATGGAAACCGCCGTCGAGGCGCTCAAAGCGGGCGCGTTCGACTTCGTCTCCAAACCGGTCGA
TCTACCGGTGCTTCGCCGCCTGGTCGAGACAGCGCTGCGTCTCGATGGCAACGACCAGGCGCCTGCATCGCCGAAAAGCC
ACGGCGACCTGCTCGGAAAATCGCCGGCGATGCAGGAAATTCGCCGCCTGATCGAAAAGCTCGCGCGCAACCAGGCACCG
GTGTTCATCAGCGGCGAGTCGGGCACCGGTAAGGAACTGGCGGCGCGCTCGATCCATTCCCGCAGCCCGAGGGCATCCCG
CCCTTTTGTTGCGGTCAACTGCGGCGCGATCCCGCAAGACCTGATGGAAAGCGAGTTCTTCGGCCATGTGAAAGGCAGTT
TCACCGGCGCAGTGCGCGACAAACCCGGGCTGTTCCAGACGGCCGACGGCGGCACCCTGTTTCTCGACGAAGTCGCCGAC
CTGCCGTTGTCAATGCAGGTCAAGCTGTTGCGCGCAATCCAGGAGAAATCGGTACGCCCCGTCGGTGGCGAGAAAGAAGA
GTCGGTGGACGTCCGTATCATCAGTGCCAGCCACAAGGATCTGGCTGCCATGGTCGCCGGCGGCGAGTTTCGGCAGGACC
TTTACTACCGCATCCATGTCATCGAGCTGATCATGGCGCCGCTGCGCGAGCGGCCGGAGGATATCCCGGTCATGATCGAG
CACATCCTCAGCCGGCTTGCTCAGCGCATGGGCGCGAACCCACCGAAACTGGAACGCAGTGCGCTGGAGGCCCTGTATCG
GCACGACTTTCCCGGAAACGTGCGCGAATTGGAGAATCTGTTGGAGCGAGCCACTGCGCTTTGTGAACAGCAGACCATTA
CATTGGATGACCTGGGCCTCGCCAATGCCCCGAGCGGCAACGGTCACGCCACACCCCCTTCACCGCTCGCCGACCAGGGT
CTGGAGGGCTACCTGGCCGATGTGGAACGCCAGGCCATCGTGCAAGCCCTTGAAACCAACAAGTGGAACCGAACTGCGGC
CGCCAAGGCGCTCGGCATCAGTTTCAGGGCACTGCGATACCGTCTCGAGAAGCTCGGCCTGGATGCCGAGGACGACGGCA
CTGACGCTCAAGGTCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(137-303)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.277

97.603

0.608
  pilR Acinetobacter baumannii strain A118

48.498

100

0.492
  luxO Vibrio cholerae strain A1552

39.15

97.386

0.381

Multiple sequence alignment