Detailed information NTG0218974

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: B1781_RS18105
• Genome accession: NZ_CP019936
• Coordinates: 3819975..3820811 (+)
• Length: 278 a.a.
• NCBI ID: WP_334223777.1
• Uniprot ID: -
• Organism: Thiosocius teredinicola strain PMS-2146H.STBD.0c.01a
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3814975..3825811

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B1781_RS23645	-	3815788..3815887 (+)	100	Protein_3590	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
B1781_RS18090	-	3816373..3816795 (+)	423	WP_078120999.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
B1781_RS18095	pilB	3816958..3818673 (+)	1716	WP_078121000.1	type IV-A pilus assembly ATPase PilB	Machinery gene
B1781_RS18100	pilC	3818686..3819933 (+)	1248	WP_078121001.1	type II secretion system F family protein	Machinery gene
B1781_RS18105	pilD	3819975..3820811 (+)	837	WP_334223777.1	A24 family peptidase	Machinery gene
B1781_RS18110	coaE	3820804..3821409 (+)	606	WP_334223778.1	dephospho-CoA kinase	-
B1781_RS18115	zapD	3821465..3822250 (+)	786	WP_164513453.1	cell division protein ZapD	-
B1781_RS18120	yacG	3822247..3822438 (+)	192	WP_078121004.1	DNA gyrase inhibitor YacG	-
B1781_RS18125	-	3822466..3822888 (-)	423	WP_078121005.1	hypothetical protein	-
B1781_RS18130	-	3822872..3823828 (-)	957	WP_078121006.1	Nudix family hydrolase	-
B1781_RS18135	argJ	3823842..3825044 (-)	1203	WP_078121007.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
B1781_RS18140	-	3825582..3825800 (+)	219	WP_125932161.1	hypothetical protein	-

Sequence

Protein

• Length: 278 a.a.
• Molecular weight: 30065.71 Da
• Isoelectric Point: 5.7603

>NTDB_id=218974 B1781_RS18105 WP_334223777.1 3819975..3820811(+) (pilD) [Thiosocius teredinicola strain PMS-2146H.STBD.0c.01a]
MALLFGLVIGSFLNVVILRLPKRMQAELADACADLRGEESTPLPSRLFGLDFLISPPSTCPKCGHGIKAWENIPIISYLL
LRGKCSECSNPIGIRYPIVEAITGVLSLVVVMHFGPTMQAAAALILTWGLVALTAIDLDEQLLPDQLTLPLMWLGLLVNT
QGLFTDLTSAVIGAATGYLVLWFVFQLFRFLTGREGMGYGDFKLLAAFGAFFGWQLLPQVILLSSLIGAIVGIALVVVRG
RDRQIPIPFGPYLAGAGFVALLWGDEINRSYLQLAGFG

Nucleotide

• Length: 837 bp

>NTDB_id=218974 B1781_RS18105 WP_334223777.1 3819975..3820811(+) (pilD) [Thiosocius teredinicola strain PMS-2146H.STBD.0c.01a]
GTGGCGCTGCTGTTCGGCTTGGTGATCGGCAGCTTCCTCAACGTTGTTATTTTGCGGCTCCCCAAGCGCATGCAGGCAGA
GCTTGCTGACGCTTGTGCTGATCTGCGCGGCGAGGAATCGACTCCCCTGCCGAGTCGCCTGTTTGGCCTGGACTTCCTGA
TCTCCCCTCCGTCAACCTGCCCAAAGTGCGGTCACGGCATCAAGGCCTGGGAGAACATCCCGATCATCAGTTACCTGCTG
CTGCGCGGAAAGTGCAGTGAATGCTCCAATCCGATAGGCATCCGCTACCCGATCGTCGAGGCGATCACGGGGGTACTCAG
CCTGGTCGTCGTCATGCACTTCGGGCCTACGATGCAGGCGGCCGCGGCGCTGATCCTGACCTGGGGGCTCGTCGCGCTGA
CGGCCATTGATCTCGACGAACAACTCCTGCCCGACCAGCTCACTCTGCCGCTGATGTGGCTTGGCCTGCTGGTGAATACG
CAGGGCCTGTTTACCGACCTGACCTCTGCAGTCATCGGTGCCGCAACCGGCTACCTGGTGTTGTGGTTTGTGTTCCAGCT
GTTTCGCTTTCTCACCGGCCGCGAAGGCATGGGGTACGGCGACTTCAAACTGCTGGCGGCGTTCGGCGCTTTTTTCGGCT
GGCAATTGCTCCCGCAGGTCATCCTGTTGTCGTCGCTGATTGGCGCAATCGTAGGGATCGCATTGGTCGTGGTGCGCGGG
CGAGACAGGCAGATCCCTATCCCGTTCGGCCCCTACCTTGCCGGAGCGGGTTTCGTGGCGCTATTGTGGGGCGACGAAAT
CAACCGCAGCTATCTGCAATTGGCGGGATTTGGCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (4-114)

• Type IV leader peptidase family (Peptidase_A24) (124-233)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	52.416	96.763	0.507
pilD	Acinetobacter nosocomialis M2	52.045	96.763	0.504
pilD	Vibrio cholerae strain A1552	49.451	98.201	0.486
pilD	Vibrio campbellii strain DS40M4	49.265	97.842	0.482
pilD	Neisseria gonorrhoeae MS11	45.926	97.122	0.446