Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   SPSF3K_RS00475 Genome accession   NZ_CP025420
Coordinates   86785..88056 (+) Length   423 a.a.
NCBI ID   WP_003108931.1    Uniprot ID   A0ABN0IP57
Organism   Streptococcus parauberis strain SPOF3K     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 81785..93056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPSF3K_RS00455 (SPSF3K_00096) hexB 82036..84012 (+) 1977 WP_003108928.1 DNA mismatch repair endonuclease MutL Machinery gene
  SPSF3K_RS00460 (SPSF3K_00097) - 84023..85246 (+) 1224 WP_003103803.1 MDR family MFS transporter -
  SPSF3K_RS00465 (SPSF3K_00098) ruvA 85248..85841 (+) 594 WP_003108930.1 Holliday junction branch migration protein RuvA Machinery gene
  SPSF3K_RS00470 (SPSF3K_00099) - 85845..86396 (+) 552 WP_096633379.1 DNA-3-methyladenine glycosylase I -
  SPSF3K_RS00475 (SPSF3K_00100) cinA 86785..88056 (+) 1272 WP_003108931.1 competence/damage-inducible protein A Machinery gene
  SPSF3K_RS00480 (SPSF3K_00101) recA 88136..89275 (+) 1140 WP_003102546.1 recombinase RecA -
  SPSF3K_RS00485 (SPSF3K_00102) spx 89629..90027 (+) 399 WP_003104943.1 transcriptional regulator Spx -
  SPSF3K_RS00490 (SPSF3K_00103) - 90141..90410 (+) 270 WP_003104158.1 IreB family regulatory phosphoprotein -
  SPSF3K_RS00495 (SPSF3K_00104) ruvX 90407..90826 (+) 420 WP_003105581.1 Holliday junction resolvase RuvX -
  SPSF3K_RS00500 (SPSF3K_00105) - 90837..91154 (+) 318 WP_003104776.1 DUF1292 domain-containing protein -
  SPSF3K_RS00505 (SPSF3K_00106) - 91303..92862 (+) 1560 WP_003108934.1 hypothetical protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46135.82 Da        Isoelectric Point: 4.8894

>NTDB_id=218911 SPSF3K_RS00475 WP_003108931.1 86785..88056(+) (cinA) [Streptococcus parauberis strain SPOF3K]
MKAELIAVGTEILTGQIVNTNAQFLSEKMAEIGVDVYYHTAVGDNEIRLLNILEVASKRSDLVILCGGLGPTEDDLTKQT
LAKFLGLSLVFDREASQKLDQFFSSRSESSRTPNNERQAQLIEGSKPIQNITGLAVGGLIEKAGVTYVVLPGPPSEMKPM
VNQYLLPLLLNEETKLYSRVLRFFGIGESQLVTILADLIANQLDPTIASYAKIGEVTLRLSTKSDSQELAYQKLDQLESQ
IKAISTIDGQLLGDLLYGYGEDNSLARETFQLLKKADKTITAAESLTAGLFQSKIADFPGSSSIFNGGFVTYSIEEKAKM
LEIPFADLQRKGVVSDYTAKQMANQARLLTESDIGVSLTGVAGPDFLEGQQAGTVFIGISTKEKVESYKVLIGGRSRSDV
RYIACLHAFNLVRKTLLNTQNLL

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=218911 SPSF3K_RS00475 WP_003108931.1 86785..88056(+) (cinA) [Streptococcus parauberis strain SPOF3K]
ATGAAAGCTGAATTAATTGCAGTCGGAACAGAAATCTTGACCGGTCAAATAGTTAATACGAACGCACAGTTTTTATCAGA
AAAAATGGCAGAGATTGGAGTTGATGTCTATTATCATACAGCAGTAGGCGATAATGAAATCAGATTATTAAATATCCTTG
AAGTTGCAAGTAAACGTAGTGATTTAGTGATATTATGTGGCGGTTTGGGACCTACTGAGGATGATTTGACTAAACAAACG
CTAGCTAAGTTTTTAGGTCTGTCATTGGTCTTTGACAGAGAAGCTAGTCAAAAACTGGACCAATTTTTTTCCTCTCGGTC
TGAGAGTTCTAGAACTCCAAATAATGAGAGGCAAGCACAGTTGATTGAAGGGTCCAAACCTATTCAAAACATTACAGGTC
TAGCTGTTGGTGGTTTAATCGAAAAAGCTGGTGTAACTTATGTCGTCTTACCTGGACCGCCTAGTGAAATGAAACCAATG
GTTAATCAGTATCTACTACCACTGTTGCTGAATGAGGAAACTAAACTCTACTCTCGTGTTTTACGTTTTTTTGGAATTGG
AGAAAGCCAATTAGTTACTATTTTAGCTGATCTTATTGCAAATCAATTAGACCCAACAATTGCTTCCTATGCCAAAATCG
GCGAGGTAACATTGCGCTTGTCAACTAAGTCTGATTCTCAAGAGCTAGCTTATCAAAAATTGGATCAATTAGAAAGTCAG
ATTAAGGCCATTTCAACTATAGATGGACAATTATTAGGAGACTTATTATATGGATATGGTGAGGATAATAGCCTGGCGCG
TGAGACTTTCCAGTTGTTAAAAAAAGCAGATAAGACAATTACAGCTGCAGAAAGTTTAACAGCAGGGCTATTCCAATCTA
AAATTGCTGATTTTCCAGGGTCATCCAGTATTTTTAACGGTGGATTTGTTACCTATAGTATCGAAGAAAAGGCAAAAATG
TTAGAGATTCCATTTGCTGATTTACAACGAAAAGGTGTTGTTAGTGATTATACTGCTAAACAAATGGCTAATCAAGCACG
ACTCTTAACTGAAAGTGATATTGGTGTTAGCTTAACTGGCGTTGCTGGTCCGGATTTCTTGGAAGGACAACAAGCAGGAA
CAGTTTTTATTGGTATTTCGACAAAAGAAAAAGTAGAATCATATAAGGTACTAATTGGCGGCAGGAGTCGCTCAGATGTC
AGATATATAGCTTGCTTACATGCCTTCAACCTAGTCCGAAAAACTTTATTAAATACCCAAAATTTGTTATAA

Domains

Predicted by InterProScan.

Competence-damaged protein (CinA)

(263-416)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-244)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

70.813

98.818

0.7
  cinA Streptococcus mutans UA159

69.74

100

0.697
  cinA Streptococcus mitis NCTC 12261

70.574

98.818

0.697
  cinA Streptococcus pneumoniae TIGR4

69.617

98.818

0.688
  cinA Streptococcus pneumoniae Rx1

69.378

98.818

0.686
  cinA Streptococcus pneumoniae R36A

69.378

98.818

0.686
  cinA Streptococcus pneumoniae R6

69.378

98.818

0.686
  cinA Streptococcus pneumoniae D39

69.139

98.818

0.683
  cinA Streptococcus suis isolate S10

53.125

98.345

0.522
  cinA Bacillus subtilis subsp. subtilis str. 168

46.172

98.818

0.456

Multiple sequence alignment