Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SPSF3K_RS00465 Genome accession   NZ_CP025420
Coordinates   85248..85841 (+) Length   197 a.a.
NCBI ID   WP_003108930.1    Uniprot ID   A0ABN0IP23
Organism   Streptococcus parauberis strain SPOF3K     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 80248..90841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPSF3K_RS00450 (SPSF3K_00095) - 80794..81939 (+) 1146 WP_003108925.1 tyrosine-type recombinase/integrase -
  SPSF3K_RS00455 (SPSF3K_00096) hexB 82036..84012 (+) 1977 WP_003108928.1 DNA mismatch repair endonuclease MutL Machinery gene
  SPSF3K_RS00460 (SPSF3K_00097) - 84023..85246 (+) 1224 WP_003103803.1 MDR family MFS transporter -
  SPSF3K_RS00465 (SPSF3K_00098) ruvA 85248..85841 (+) 594 WP_003108930.1 Holliday junction branch migration protein RuvA Machinery gene
  SPSF3K_RS00470 (SPSF3K_00099) - 85845..86396 (+) 552 WP_096633379.1 DNA-3-methyladenine glycosylase I -
  SPSF3K_RS00475 (SPSF3K_00100) cinA 86785..88056 (+) 1272 WP_003108931.1 competence/damage-inducible protein A Machinery gene
  SPSF3K_RS00480 (SPSF3K_00101) recA 88136..89275 (+) 1140 WP_003102546.1 recombinase RecA -
  SPSF3K_RS00485 (SPSF3K_00102) spx 89629..90027 (+) 399 WP_003104943.1 transcriptional regulator Spx -
  SPSF3K_RS00490 (SPSF3K_00103) - 90141..90410 (+) 270 WP_003104158.1 IreB family regulatory phosphoprotein -
  SPSF3K_RS00495 (SPSF3K_00104) ruvX 90407..90826 (+) 420 WP_003105581.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21748.20 Da        Isoelectric Point: 5.3214

>NTDB_id=218910 SPSF3K_RS00465 WP_003108930.1 85248..85841(+) (ruvA) [Streptococcus parauberis strain SPOF3K]
MFDYIKGQLTKITAKYIVVEANGLGYIIYVANPYSFSDSVNQQVTIYLHQVIREDAHLLFGFHTEEEKDVFLKLISVSGI
GPMTALAIVAVDDNEGLVMAIDNSDIKYLMKFPKIGKKTAQQMILDLAGKFVEAPKDSAPTSKANAGGNLQLDEAIEALL
ALGYKATELKKIRAFFEGTDETAEQYIKSALKMLMRG

Nucleotide


Download         Length: 594 bp        

>NTDB_id=218910 SPSF3K_RS00465 WP_003108930.1 85248..85841(+) (ruvA) [Streptococcus parauberis strain SPOF3K]
ATGTTTGATTATATAAAAGGTCAATTAACTAAAATTACTGCTAAATATATTGTGGTCGAAGCTAATGGTTTAGGCTATAT
TATCTATGTTGCTAATCCTTATAGTTTTTCTGACAGTGTCAATCAACAGGTCACTATTTATTTACACCAAGTTATTCGTG
AGGACGCTCACCTCTTATTTGGTTTTCATACAGAAGAGGAAAAAGATGTCTTCTTGAAACTCATCTCAGTTTCTGGAATT
GGTCCTATGACTGCGCTTGCGATTGTCGCCGTCGACGATAATGAAGGCTTAGTCATGGCCATTGACAACAGTGATATCAA
GTACTTAATGAAATTCCCTAAAATTGGTAAGAAAACAGCTCAGCAAATGATTTTAGACTTAGCTGGTAAGTTTGTTGAGG
CACCTAAAGATAGTGCCCCAACAAGTAAAGCAAACGCGGGTGGCAATCTACAACTTGATGAAGCTATTGAAGCACTACTT
GCACTGGGCTACAAAGCAACAGAATTGAAGAAAATTCGAGCTTTCTTTGAAGGAACAGATGAAACAGCTGAGCAGTATAT
TAAATCAGCTCTTAAAATGTTGATGAGAGGTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(152-195)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

66.162

100

0.665
  ruvA Streptococcus pneumoniae D39

66.162

100

0.665
  ruvA Streptococcus pneumoniae TIGR4

65.99

100

0.66
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.58

100

0.426

Multiple sequence alignment