Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ERICV_RS10360 | Genome accession | NZ_CP019717 |
| Coordinates | 1918137..1918538 (+) | Length | 133 a.a. |
| NCBI ID | WP_172423267.1 | Uniprot ID | A0A6C0QRS8 |
| Organism | Paenibacillus larvae subsp. larvae strain Eric_V | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1913137..1923538
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ERICV_RS10315 (ERICV_02132) | - | 1913247..1913600 (+) | 354 | WP_172423260.1 | hypothetical protein | - |
| ERICV_RS10320 (ERICV_02133) | - | 1913597..1913842 (+) | 246 | WP_172423261.1 | hypothetical protein | - |
| ERICV_RS10325 (ERICV_02135) | - | 1913989..1914762 (+) | 774 | WP_172423262.1 | Rha family transcriptional regulator | - |
| ERICV_RS10330 (ERICV_02136) | - | 1914777..1914968 (+) | 192 | WP_172423263.1 | hypothetical protein | - |
| ERICV_RS10335 (ERICV_02137) | - | 1915005..1915268 (+) | 264 | WP_024093551.1 | hypothetical protein | - |
| ERICV_RS10340 (ERICV_02138) | - | 1915276..1915698 (+) | 423 | WP_172423264.1 | hypothetical protein | - |
| ERICV_RS25655 (ERICV_02139) | - | 1915858..1915992 (+) | 135 | WP_272871285.1 | hypothetical protein | - |
| ERICV_RS10345 | - | 1916173..1916340 (+) | 168 | WP_155121034.1 | hypothetical protein | - |
| ERICV_RS10350 (ERICV_02141) | - | 1916431..1917321 (+) | 891 | WP_172423265.1 | hypothetical protein | - |
| ERICV_RS10355 (ERICV_02142) | - | 1917284..1918084 (+) | 801 | WP_172423266.1 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| ERICV_RS10360 (ERICV_02143) | ssbA | 1918137..1918538 (+) | 402 | WP_172423267.1 | single-stranded DNA-binding protein | Machinery gene |
| ERICV_RS10365 (ERICV_02144) | - | 1918562..1918894 (+) | 333 | WP_172423268.1 | hypothetical protein | - |
| ERICV_RS10370 (ERICV_02145) | - | 1918943..1919833 (+) | 891 | WP_172423269.1 | DnaD domain protein | - |
| ERICV_RS10375 (ERICV_02146) | - | 1919796..1920545 (+) | 750 | WP_237089727.1 | ATP-binding protein | - |
| ERICV_RS10380 (ERICV_02148) | - | 1920664..1920873 (+) | 210 | WP_036656473.1 | hypothetical protein | - |
| ERICV_RS10385 (ERICV_02149) | - | 1920875..1921249 (+) | 375 | WP_036656474.1 | RusA family crossover junction endodeoxyribonuclease | - |
| ERICV_RS10390 (ERICV_02150) | - | 1921441..1921671 (+) | 231 | WP_172423271.1 | hypothetical protein | - |
| ERICV_RS10395 (ERICV_02151) | - | 1921898..1922563 (+) | 666 | WP_077585242.1 | DNA methyltransferase | - |
| ERICV_RS10400 (ERICV_02152) | - | 1922657..1922965 (+) | 309 | WP_023485192.1 | hypothetical protein | - |
| ERICV_RS10405 (ERICV_02153) | - | 1922972..1923202 (+) | 231 | WP_172423272.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 133 a.a. Molecular weight: 15065.80 Da Isoelectric Point: 5.2869
>NTDB_id=218027 ERICV_RS10360 WP_172423267.1 1918137..1918538(+) (ssbA) [Paenibacillus larvae subsp. larvae strain Eric_V]
MLNRVVLIGRLTKDPELRYTSSGIAYTSFTLAVERPFKTNGDKETDFINIVTWRQAAEACANYLRKGRLTAVEGRIQVRN
YENNEGRRIYVTEVVADNVRFLESSKKNNDTLNTEDSSNQESAPVDISDGLPF
MLNRVVLIGRLTKDPELRYTSSGIAYTSFTLAVERPFKTNGDKETDFINIVTWRQAAEACANYLRKGRLTAVEGRIQVRN
YENNEGRRIYVTEVVADNVRFLESSKKNNDTLNTEDSSNQESAPVDISDGLPF
Nucleotide
Download Length: 402 bp
>NTDB_id=218027 ERICV_RS10360 WP_172423267.1 1918137..1918538(+) (ssbA) [Paenibacillus larvae subsp. larvae strain Eric_V]
GTGCTAAATCGTGTCGTGTTAATCGGTAGGCTGACAAAGGATCCGGAACTGCGTTACACCTCTAGTGGCATTGCGTATAC
CTCATTTACGCTTGCCGTTGAGCGTCCATTCAAGACTAATGGAGACAAAGAAACAGATTTTATAAATATTGTTACTTGGA
GACAAGCCGCGGAAGCCTGTGCCAACTACCTTCGCAAAGGCCGTTTGACGGCGGTAGAAGGAAGAATTCAGGTACGCAAT
TATGAGAATAATGAGGGCCGCAGAATCTATGTAACCGAGGTTGTAGCTGATAATGTGCGTTTTTTGGAATCCAGCAAGAA
AAATAACGACACTCTGAACACGGAGGATTCATCGAATCAGGAGAGCGCACCAGTCGACATATCCGATGGCTTGCCATTTT
GA
GTGCTAAATCGTGTCGTGTTAATCGGTAGGCTGACAAAGGATCCGGAACTGCGTTACACCTCTAGTGGCATTGCGTATAC
CTCATTTACGCTTGCCGTTGAGCGTCCATTCAAGACTAATGGAGACAAAGAAACAGATTTTATAAATATTGTTACTTGGA
GACAAGCCGCGGAAGCCTGTGCCAACTACCTTCGCAAAGGCCGTTTGACGGCGGTAGAAGGAAGAATTCAGGTACGCAAT
TATGAGAATAATGAGGGCCGCAGAATCTATGTAACCGAGGTTGTAGCTGATAATGTGCGTTTTTTGGAATCCAGCAAGAA
AAATAACGACACTCTGAACACGGAGGATTCATCGAATCAGGAGAGCGCACCAGTCGACATATCCGATGGCTTGCCATTTT
GA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
63.462 |
78.195 |
0.496 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.952 |
78.947 |
0.481 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.731 |
78.195 |
0.444 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
39.259 |
100 |
0.398 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
38.519 |
100 |
0.391 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
38.519 |
100 |
0.391 |
| ssbB/cilA | Streptococcus mitis SK321 |
38.519 |
100 |
0.391 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
38.519 |
100 |
0.391 |
| ssbA | Streptococcus mutans UA159 |
38.06 |
100 |
0.383 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
45.714 |
78.947 |
0.361 |