Detailed information    

insolico Bioinformatically predicted

Overview


Name   letA   Type   Regulator
Locus tag   CV094_RS11245 Genome accession   NZ_CP025266
Coordinates   2351791..2352426 (-) Length   211 a.a.
NCBI ID   WP_000633799.1    Uniprot ID   A0AA36K8B3
Organism   Acinetobacter baumannii isolate SMC_Paed_Ab_BL01     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2346791..2357426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV094_RS11230 (CV094_11230) - 2347578..2348762 (+) 1185 WP_000939107.1 S41 family peptidase -
  CV094_RS11235 (CV094_11235) - 2348766..2350187 (-) 1422 WP_017816292.1 sigma-54-dependent transcriptional regulator -
  CV094_RS11240 (CV094_11240) pilS 2350212..2351780 (-) 1569 WP_033915466.1 PAS domain-containing sensor histidine kinase Regulator
  CV094_RS11245 (CV094_11245) letA 2351791..2352426 (-) 636 WP_000633799.1 response regulator Regulator
  CV094_RS11250 (CV094_11250) pbpG 2352639..2353685 (+) 1047 WP_031946417.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  CV094_RS11255 (CV094_11255) thrC 2353793..2354932 (-) 1140 WP_000063593.1 threonine synthase -
  CV094_RS11260 (CV094_11260) - 2354988..2356289 (-) 1302 WP_000805827.1 homoserine dehydrogenase -
  CV094_RS11265 (CV094_11265) - 2356534..2357349 (-) 816 WP_000011163.1 DsbC family protein -

Sequence


Protein


Download         Length: 211 a.a.        Molecular weight: 23147.79 Da        Isoelectric Point: 5.0959

>NTDB_id=218027 CV094_RS11245 WP_000633799.1 2351791..2352426(-) (letA) [Acinetobacter baumannii isolate SMC_Paed_Ab_BL01]
MITVLVVDDHELVRTGICRMLEDHADVEVIGQAESGEEAIAIVRQQHPQVVLLDVNMPGIGGVETTRRLLQTAPETKVIA
VSGLAEEPYPSLLLKAGAKGYITKGAPIAEMVRAINKVMQGGKYFSADIAEQLASSYLSDTQQSPFDSLSEREMQVAMMV
VNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDVKLTHLAIRYGLIKP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=218027 CV094_RS11245 WP_000633799.1 2351791..2352426(-) (letA) [Acinetobacter baumannii isolate SMC_Paed_Ab_BL01]
TTGATTACAGTTTTAGTTGTCGATGACCATGAACTGGTACGTACGGGTATTTGCCGTATGTTAGAAGATCATGCCGATGT
TGAGGTAATTGGACAAGCCGAATCGGGCGAAGAAGCAATTGCTATCGTTCGCCAACAACATCCGCAAGTCGTACTGCTGG
ATGTCAATATGCCGGGCATCGGTGGCGTAGAAACAACCCGTCGTTTATTACAGACGGCTCCAGAGACGAAAGTCATTGCT
GTAAGCGGCCTCGCCGAAGAGCCTTACCCATCTTTATTATTAAAAGCCGGTGCAAAAGGCTATATCACTAAAGGCGCGCC
AATTGCCGAAATGGTTCGTGCAATTAATAAGGTCATGCAAGGCGGTAAATATTTTAGTGCAGATATTGCCGAACAACTCG
CGAGCTCATATTTATCCGACACTCAACAATCCCCTTTTGATTCATTATCGGAACGGGAAATGCAAGTTGCAATGATGGTC
GTCAACTGTATTAGTGCCCAAGAAATTGCCGATAAACTTTTTGTAAGTGTGAAAACTGTAAATACTTACCGTTATCGTAT
TTTTGAAAAGTTAGGAATTGATAGTGATGTAAAACTAACACATCTTGCGATTCGTTACGGTTTGATCAAGCCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0AA36K8B3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

55.238

99.526

0.55

  letA Legionella pneumophila strain ERS1305867

55.238

99.526

0.55


Multiple sequence alignment