Detailed information NTG0217290

Bioinformatically predicted

Overview

• Name: ssbB/cilA
• Type: Machinery gene
• Locus tag: CWI64_RS05040
• Genome accession: NZ_CP025076
• Coordinates: 943246..943641 (-)
• Length: 131 a.a.
• NCBI ID: WP_000282467.1
• Uniprot ID: Q8DNH4
• Organism: Streptococcus pneumoniae strain BHN97x
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 938246..948641

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CWI64_RS11650	-	938678..939043 (-)	366	WP_000800711.1	helix-turn-helix transcriptional regulator	-
CWI64_RS05020 (CWI64_05020)	-	939056..939829 (-)	774	WP_044815107.1	class I SAM-dependent methyltransferase	-
CWI64_RS05025 (CWI64_05025)	-	940275..941030 (-)	756	Protein_933	epoxyqueuosine reductase QueH	-
CWI64_RS05030 (CWI64_05030)	groL	941168..942790 (-)	1623	WP_000031577.1	chaperonin GroEL	-
CWI64_RS05035 (CWI64_05035)	groES	942806..943090 (-)	285	WP_000917304.1	co-chaperone GroES	-
CWI64_RS05040 (CWI64_05040)	ssbB/cilA	943246..943641 (-)	396	WP_000282467.1	single-stranded DNA-binding protein	Machinery gene
CWI64_RS05045 (CWI64_05045)	-	943719..944480 (-)	762	WP_001107755.1	SDR family NAD(P)-dependent oxidoreductase	-
CWI64_RS05050 (CWI64_05050)	ytpR	944513..945139 (-)	627	WP_000578309.1	YtpR family tRNA-binding protein	-
CWI64_RS05055 (CWI64_05055)	-	945155..945472 (-)	318	WP_000615767.1	thioredoxin family protein	-
CWI64_RS05060 (CWI64_05060)	-	945469..945768 (-)	300	WP_001013974.1	DUF4651 domain-containing protein	-
CWI64_RS12280	-	945862..945993 (+)	132	WP_001811306.1	hypothetical protein	-
CWI64_RS11970	-	946018..946080 (-)	63	WP_219300018.1	hypothetical protein	-
CWI64_RS05065 (CWI64_05065)	-	946105..946296 (-)	192	WP_000291826.1	cell wall-binding protein	-
CWI64_RS05070 (CWI64_05070)	-	946457..947086 (-)	630	WP_239424734.1	hypothetical protein	-
CWI64_RS05080 (CWI64_05080)	-	947142..948314 (+)	1173	WP_100931674.1	IS256-like element IS256 family transposase	-

Sequence

Protein

• Length: 131 a.a.
• Molecular weight: 14925.89 Da
• Isoelectric Point: 5.9409

>NTDB_id=217290 CWI64_RS05040 WP_000282467.1 943246..943641(-) (ssbB/cilA) [Streptococcus pneumoniae strain BHN97x]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide

• Length: 396 bp

>NTDB_id=217290 CWI64_RS05040 WP_000282467.1 943246..943641(-) (ssbB/cilA) [Streptococcus pneumoniae strain BHN97x]
ATGTATAATAAAGTTATCATGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC
GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTCCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGTCAGATGAATTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCTATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterProScan.

• Single-strand binding protein family (SSB) (3-101)

3D structure

• AlphaFold DB: Q8DNH4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbB/cilA	Streptococcus pneumoniae D39	100	100	1
ssbB/cilA	Streptococcus pneumoniae Rx1	100	100	1
ssbB/cilA	Streptococcus pneumoniae R6	100	100	1
ssbB/cilA	Streptococcus pneumoniae TIGR4	99.237	100	0.992
ssbB/cilA	Streptococcus mitis SK321	98.473	100	0.985
ssbB/cilA	Streptococcus mitis NCTC 12261	98.473	100	0.985
ssbA	Streptococcus mutans UA159	74.809	100	0.748
ssbB	Streptococcus sobrinus strain NIDR 6715-7	70.229	100	0.702
ssbB	Lactococcus lactis subsp. cremoris KW2	59.821	85.496	0.511
ssbA	Bacillus subtilis subsp. subtilis str. 168	50.943	80.916	0.412
ssb	Latilactobacillus sakei subsp. sakei 23K	46.903	86.26	0.405