Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | BWP24_RS12085 | Genome accession | NZ_CP019293 |
| Coordinates | 2537953..2538240 (-) | Length | 95 a.a. |
| NCBI ID | WP_077200976.1 | Uniprot ID | - |
| Organism | Vibrio campbellii strain LMB29 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2532953..2543240
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BWP24_RS12060 (BWP24_12100) | - | 2533394..2534608 (+) | 1215 | WP_029788618.1 | pyridoxal phosphate-dependent aminotransferase | - |
| BWP24_RS12065 (BWP24_12105) | yfbR | 2534692..2535276 (+) | 585 | WP_005425568.1 | 5'-deoxynucleotidase | - |
| BWP24_RS12070 (BWP24_12110) | - | 2535280..2536614 (+) | 1335 | WP_077200974.1 | anti-phage deoxyguanosine triphosphatase | - |
| BWP24_RS12075 (BWP24_12115) | - | 2536635..2537252 (-) | 618 | WP_077200975.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| BWP24_RS12080 (BWP24_12120) | rrtA | 2537256..2537807 (+) | 552 | WP_045377767.1 | rhombosortase | - |
| BWP24_RS12085 (BWP24_12125) | comEA | 2537953..2538240 (-) | 288 | WP_077200976.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| BWP24_RS12090 (BWP24_12130) | ppiD | 2538386..2540245 (-) | 1860 | WP_038890556.1 | peptidylprolyl isomerase | - |
| BWP24_RS12095 (BWP24_12135) | - | 2540460..2540732 (-) | 273 | WP_005430934.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 95 a.a. Molecular weight: 10461.19 Da Isoelectric Point: 5.8692
>NTDB_id=214652 BWP24_RS12085 WP_077200976.1 2537953..2538240(-) (comEA) [Vibrio campbellii strain LMB29]
MKWMLTLCLLILAPMSLAETKTKADKYEGIEITVNVNSATAEEIATLLNGIGEKKAQDIVEYRNEHGPFKTAADLTKVKG
IGEATVKKNEDRILL
MKWMLTLCLLILAPMSLAETKTKADKYEGIEITVNVNSATAEEIATLLNGIGEKKAQDIVEYRNEHGPFKTAADLTKVKG
IGEATVKKNEDRILL
Nucleotide
Download Length: 288 bp
>NTDB_id=214652 BWP24_RS12085 WP_077200976.1 2537953..2538240(-) (comEA) [Vibrio campbellii strain LMB29]
ATGAAATGGATGTTAACGCTGTGCTTATTGATACTCGCGCCGATGAGCTTGGCGGAAACAAAGACTAAAGCAGATAAGTA
TGAAGGTATTGAGATTACGGTTAACGTTAACTCTGCCACTGCAGAAGAGATTGCGACGCTACTTAATGGTATTGGTGAGA
AGAAAGCGCAAGATATTGTTGAGTATCGCAACGAGCACGGTCCATTTAAAACAGCTGCGGATCTTACTAAGGTGAAAGGC
ATCGGTGAGGCGACTGTGAAGAAGAACGAAGACCGCATCCTGCTGTAA
ATGAAATGGATGTTAACGCTGTGCTTATTGATACTCGCGCCGATGAGCTTGGCGGAAACAAAGACTAAAGCAGATAAGTA
TGAAGGTATTGAGATTACGGTTAACGTTAACTCTGCCACTGCAGAAGAGATTGCGACGCTACTTAATGGTATTGGTGAGA
AGAAAGCGCAAGATATTGTTGAGTATCGCAACGAGCACGGTCCATTTAAAACAGCTGCGGATCTTACTAAGGTGAAAGGC
ATCGGTGAGGCGACTGTGAAGAAGAACGAAGACCGCATCCTGCTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio campbellii strain DS40M4 |
95.789 |
100 |
0.958 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
81.053 |
100 |
0.811 |
| comEA | Vibrio cholerae C6706 |
58.333 |
100 |
0.589 |
| comEA | Vibrio cholerae strain A1552 |
58.333 |
100 |
0.589 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
39.286 |
100 |
0.463 |
| comEA | Acinetobacter baumannii strain A118 |
31.707 |
100 |
0.411 |
| comE | Neisseria gonorrhoeae MS11 |
40.86 |
97.895 |
0.4 |
| comE | Neisseria gonorrhoeae MS11 |
40.86 |
97.895 |
0.4 |
| comE | Neisseria gonorrhoeae MS11 |
40.86 |
97.895 |
0.4 |
| comE | Neisseria gonorrhoeae MS11 |
40.86 |
97.895 |
0.4 |
| comEA | Acinetobacter baylyi ADP1 |
48.649 |
77.895 |
0.379 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
56.452 |
65.263 |
0.368 |