Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RS694_RS16040 Genome accession   NZ_CP019239
Coordinates   3367985..3369202 (+) Length   405 a.a.
NCBI ID   WP_029707424.1    Uniprot ID   A0A1P8KCY9
Organism   Rhodoferax saidenbachensis strain DSM 22694     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3362985..3374202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS694_RS16015 (RS694_16015) cgtA 3363062..3364141 (-) 1080 WP_029707431.1 Obg family GTPase CgtA -
  RS694_RS16020 (RS694_16020) rpmA 3364280..3364540 (-) 261 WP_029707429.1 50S ribosomal protein L27 -
  RS694_RS16025 (RS694_16025) rplU 3364553..3364867 (-) 315 WP_029707428.1 50S ribosomal protein L21 -
  RS694_RS16030 (RS694_16030) - 3365074..3366003 (+) 930 WP_081708612.1 polyprenyl synthetase family protein -
  RS694_RS16035 (RS694_16035) pilB 3366232..3367965 (+) 1734 WP_029707425.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RS694_RS16040 (RS694_16040) pilC 3367985..3369202 (+) 1218 WP_029707424.1 type II secretion system F family protein Machinery gene
  RS694_RS16045 (RS694_16045) pilD 3369202..3370050 (+) 849 WP_029707423.1 prepilin peptidase Machinery gene
  RS694_RS16050 (RS694_16050) coaE 3370065..3370664 (+) 600 WP_029707422.1 dephospho-CoA kinase -
  RS694_RS16055 (RS694_16055) zapD 3370687..3371442 (+) 756 WP_029707421.1 cell division protein ZapD -
  RS694_RS16060 (RS694_16060) - 3371459..3371662 (+) 204 WP_076069821.1 DNA gyrase inhibitor YacG -
  RS694_RS16065 (RS694_16065) - 3371714..3372202 (-) 489 WP_029707420.1 NUDIX domain-containing protein -
  RS694_RS16070 (RS694_16070) - 3372199..3373026 (-) 828 WP_420805931.1 ATP-binding protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44287.13 Da        Isoelectric Point: 9.3254

>NTDB_id=214342 RS694_RS16040 WP_029707424.1 3367985..3369202(+) (pilC) [Rhodoferax saidenbachensis strain DSM 22694]
MATAKPADNKDVVFEWEGKDRNGKQVRGEIRAAGENQVKASLRRQGVTPTKIKKRRMRSGKSIKPKDLAIFTRQLATMMK
AGVPLLQAFDIVGRGNPNPSVTKLLNDIRTDVETGTSLSTAFRKYPIYFDNLYCNLVEAGESAGILDALLDRLAVYMEKT
EAIKSKIKSALMYPITVLIVAFVVVAVIMIFVIPSFKQVFTSFGGELPAPTLMVMAMSEFFISYWYLIFGGLGGGVYFFL
QAWKRDERVQAVMDRIMRKLPIFGVLVEKSCIARWTRTLSTMFAAGVPLVEALDSVGGAAGNIVYQEATLKIQQEVSTGT
ALTAAMTNANLFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDDMVAGISSLMEPIIIVVLGTVIGGIVVAMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=214342 RS694_RS16040 WP_029707424.1 3367985..3369202(+) (pilC) [Rhodoferax saidenbachensis strain DSM 22694]
ATGGCAACGGCAAAACCTGCGGACAACAAAGACGTTGTATTTGAATGGGAAGGCAAGGATCGCAACGGAAAACAGGTGCG
TGGCGAAATACGTGCAGCTGGCGAGAACCAGGTCAAGGCATCCTTGCGTCGTCAAGGCGTCACCCCAACCAAAATCAAAA
AGCGCCGCATGCGCTCTGGCAAATCGATCAAGCCCAAGGATTTGGCGATCTTCACGCGTCAGCTCGCGACCATGATGAAA
GCTGGCGTGCCTCTGCTTCAGGCTTTTGATATTGTGGGCCGTGGCAACCCCAATCCCAGCGTAACCAAGTTGCTCAACGA
TATCCGTACCGATGTAGAGACTGGTACATCTCTGAGTACAGCGTTTCGCAAGTACCCCATTTATTTCGACAACCTTTACT
GCAATCTGGTCGAGGCAGGGGAATCTGCGGGTATCTTGGACGCCTTATTGGACCGGCTTGCGGTCTACATGGAAAAGACA
GAGGCCATCAAGTCCAAAATCAAATCAGCGCTGATGTACCCCATCACGGTACTGATCGTGGCTTTTGTAGTGGTCGCGGT
GATCATGATTTTTGTAATTCCCTCCTTCAAGCAGGTGTTCACGTCTTTTGGCGGAGAACTCCCTGCCCCAACGTTAATGG
TAATGGCTATGAGCGAGTTCTTTATCAGCTATTGGTACCTGATTTTTGGCGGCTTAGGCGGGGGCGTGTACTTCTTTTTG
CAAGCTTGGAAACGCGACGAAAGAGTGCAAGCTGTTATGGACCGCATCATGCGCAAGTTGCCCATTTTTGGGGTTCTCGT
AGAGAAGTCGTGCATTGCACGCTGGACCCGGACACTCTCCACCATGTTTGCGGCTGGCGTGCCTCTTGTAGAGGCCCTTG
ACTCGGTAGGAGGGGCCGCTGGCAATATTGTGTACCAGGAAGCCACCCTCAAAATACAGCAGGAGGTATCCACCGGGACC
GCACTCACCGCCGCAATGACAAATGCCAACCTATTCCCCTCCATGGTTTTGCAGATGTGCGCTATTGGAGAAGAGTCCGG
CTCCATAGACCACATGTTAGGCAAGGCTGCAGACTTTTACGAGGCTGAAGTCGATGACATGGTGGCAGGTATATCTAGCT
TGATGGAGCCCATCATTATTGTGGTCTTGGGCACAGTCATTGGCGGCATCGTGGTCGCCATGTACCTGCCTATTTTCAAG
TTGGGGCAAGTCGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1P8KCY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.634

98.519

0.528
  pilG Neisseria gonorrhoeae MS11

52.01

98.272

0.511
  pilG Neisseria meningitidis 44/76-A

51.759

98.272

0.509
  pilC Legionella pneumophila strain ERS1305867

51.256

98.272

0.504
  pilC Acinetobacter baylyi ADP1

50.754

98.272

0.499
  pilC Acinetobacter baumannii D1279779

49.118

98.025

0.481
  pilC Thermus thermophilus HB27

38.771

100

0.405
  pilC Vibrio cholerae strain A1552

40.302

98.025

0.395
  pilC Vibrio campbellii strain DS40M4

37.905

99.012

0.375

Multiple sequence alignment